Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24490 362 / 3e-126 30S ribosomal protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G005800 [exp] 483 / 6e-174 AT5G24490 369 / 1e-128 30S ribosomal protein, putative (.1) Potri.012G026375 [exp] 236 / 1e-77 AT5G24490 204 / 4e-65 30S ribosomal protein, putative (.1) Potri.012G009001 [exp] 177 / 1e-55 AT5G24490 147 / 3e-44 30S ribosomal protein, putative (.1) Potri.011G055100 [exp] 176 / 5e-55 AT5G24490 142 / 2e-42 30S ribosomal protein, putative (.1) Potri.011G054700 [exp] 118 / 1e-33 AT5G24490 89 / 1e-22 30S ribosomal protein, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015569 [exp] 356 / 1e-123 AT5G24490 358 / 2e-124 30S ribosomal protein, putative (.1) Lus10032935 [exp] 355 / 2e-123 AT5G24490 361 / 1e-125 30S ribosomal protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02482 [poplar] [flax] Ribosomal_S30AE Sigma 54 modulation protein / S30EA ribosomal protein PF16321 [poplar] [flax] Ribosom_S30AE_C Sigma 54 modulation/S30EA ribosomal protein C terminus
Representative CDS sequence Show only first row Show all	>Potri.015G002200.6 pacid=42775727 polypeptide=Potri.015G002200.6.p locus=Potri.015G002200 ID=Potri.015G002200.6.v4.1 annot-version=v4.1 ATGGCTTCTCTTGTAGGCACTTTGCATGCAGGCTTTAACAACCGAATTGCCCCTTTAACATCAACAACTCCTACTCCTTCACTAGCTTCTTCTTTTGTAA ACTCCACAAAAACCCAAGTCCCAAAAGTGTTTCTAAAGTCCAGGTTTTTAGGCAAAAATGTCAACTTTGTTGAGATTAGAAGGAAAACAAAGATCCCTTT GAGCCATGGTGGCTCTTCAATTAGGATGTCATGGGATGGCCCACTTTCATCTGTCAAATTAATCATTCAAGGCAAACACTTGGAGCTATCTGATACGGTG AAGAAACACGTGGAAGACAAAGTAGGGAAGGCAGTTCAAAAAAGTAGTCATCTTGTAAGGGGAGTTGATGTAAGGTTGTCTGTTAGAGGTGGAGAGTTGG GGAAAGGTCCAAGGATTAGAAGATGCGAGGTGACTTTGTTCACAAAGAGGCATGGAGTGGTGAGGGCGGAGGAGGATGCAGAGACAATCCATGCAAGTAT TGATTTGGTGTCGTCTATTATTCAAAGAAAGTTGAGGAAGATCAAGGACAAGGAGTCTGATCATGGTAGACACATGAAAGGGTTTAATAGGTTGAAGGTT AGGGAGCCAATGCATCAAGTTGTTGTGGAGGATGATGCAGATGAAGTTTCACAGCAAGAAGATGAGGACTATATTGAAGAGGTTGTTCGCACGAAGTATT TTGACATGCCACCCTTGACTGTGTCGGAAGCTATTGAGCAGCTGGAACATGTGCATCATGATTTCTATGGTTTCAGGGATGAAGAAACTGGTGAGATAAA TATCATTTACAAAAGAAAAGCTGGAGGATATGGTCTCATCATACCTAAAGGAAATGGCGAAGCTGAGAGATTAGAGCCTTTGGTGGTGGAACCAGCCAGA GAACCATCCTTGGCTGAATAA
AA sequence Show only first row Show all	>Potri.015G002200.6 pacid=42775727 polypeptide=Potri.015G002200.6.p locus=Potri.015G002200 ID=Potri.015G002200.6.v4.1 annot-version=v4.1 MASLVGTLHAGFNNRIAPLTSTTPTPSLASSFVNSTKTQVPKVFLKSRFLGKNVNFVEIRRKTKIPLSHGGSSIRMSWDGPLSSVKLIIQGKHLELSDTV KKHVEDKVGKAVQKSSHLVRGVDVRLSVRGGELGKGPRIRRCEVTLFTKRHGVVRAEEDAETIHASIDLVSSIIQRKLRKIKDKESDHGRHMKGFNRLKV REPMHQVVVEDDADEVSQQEDEDYIEEVVRTKYFDMPPLTVSEAIEQLEHVHHDFYGFRDEETGEINIIYKRKAGGYGLIIPKGNGEAERLEPLVVEPAR EPSLAE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24490			30S ribosomal protein, putativ...		Potri.015G002200 [exp]	0	1
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Potri.014G096500 [exp]	8.36	0.9031
AT5G49300	GATA	GATA16	GATA transcription factor 16 (...		Potri.014G124400 [exp]	14.66	0.8378
AT5G62570			Calmodulin binding protein-lik...		Potri.012G077000 [exp]	15.03	0.8203
AT3G63190		HFP108, AtcpRRF...	"ribosome recycling factor, ch...		Potri.002G052400 [exp]	22.22	0.8995	Pt-RRF.1
AT2G26340			unknown protein		Potri.006G220800 [exp]	27.82	0.8845
AT5G53490			Tetratricopeptide repeat (TPR)...		Potri.012G018100 [exp]	50.91	0.8111
AT2G44920			Tetratricopeptide repeat (TPR)...		Potri.010G200000 [exp]	54.49	0.8531
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.002G120600 [exp]	86.16	0.7905
AT4G19830			FKBP-like peptidyl-prolyl cis-...		Potri.012G119800 [exp]	89.14	0.8326
AT5G15140			Galactose mutarotase-like supe...		Potri.017G080000 [exp]	173.57	0.8200

Compare expression of checked genes

Potri.015G002200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.