Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24520 566 / 0 ATTTG1, URM23, TTG1 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) AT1G12910 420 / 9e-148 LWD1, ATAN11 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) AT3G26640 404 / 1e-141 LWD2 LIGHT-REGULATED WD 2, Transducin/WD40 repeat-like superfamily protein (.1) AT4G35050 56 / 1e-08 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT2G19540 55 / 3e-08 Transducin family protein / WD-40 repeat family protein (.1) AT1G18830 54 / 1e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT2G16780 53 / 2e-07 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT4G35370 52 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT3G15354 51 / 7e-07 SPA3 SPA1-related 3 (.1) AT1G53090 50 / 1e-06 SPA4 SPA1-related 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G006100 [exp] 670 / 0 AT5G24520 577 / 0.0 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.014G140700 [exp] 426 / 6e-150 AT1G12910 677 / 0.0 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G220500 [exp] 425 / 1e-149 AT1G12910 679 / 0.0 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G209000 [exp] 348 / 2e-119 AT1G12910 391 / 3e-136 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Potri.016G075800 [exp] 332 / 4e-113 AT1G12910 345 / 2e-118 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G066600 [exp] 66 / 3e-12 AT1G29260 379 / 3e-134 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.004G057600 [exp] 66 / 7e-12 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.005G074400 [exp] 59 / 1e-09 AT2G19540 631 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.007G094000 [exp] 59 / 2e-09 AT2G19540 623 / 0.0 Transducin family protein / WD-40 repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023228 [exp] 495 / 1e-177 AT5G24520 505 / 0.0 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10041500 [exp] 427 / 2e-150 AT1G12910 641 / 0.0 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Lus10012593 [exp] 343 / 8e-119 AT1G12910 458 / 2e-164 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Lus10005074 [exp] 51 / 6e-07 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10027848 [exp] 51 / 7e-07 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10025341 [exp] 51 / 8e-07 AT2G19540 668 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Lus10039578 [exp] 51 / 1e-06 AT3G63460 1380 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10005323 [exp] 50 / 1e-06 AT3G63460 885 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10006853 [exp] 48 / 8e-06 AT4G33270 729 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10031629 [exp] 48 / 9e-06 AT1G71840 488 / 2e-172 transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.015G002600.1 pacid=42775214 polypeptide=Potri.015G002650.1.p locus=Potri.015G002600 ID=Potri.015G002600.1.v4.1 annot-version=v4.1 ATGGAGAGCTCAACCCAAGAATCCCACCTAAGATCGGAAAACACCGTAACCTATGAATCTCCATACCCTCTCTATGCCATGGCAATCTCTTCGACCCCAT CTCGCACAAACCAATACCAACGCATTGCCTTGGGCAGCTTCACTGAAGACTACAACAACCGCATAGACATTGTCTCTTTTGACCCTGAAACCCTCTCTGT CAAAACCCATCAAAATCTCTCTCTTGAACACCCTTATCCACCCACCAAGCTCATGTTCAGCCCTTCCTCTCTTCACAAGTCCAATGACCTTTTAGCCTCT TCTGGTGACTATCTTCGCTTATGGGAAGTTAGAGACTCTGCTTCTATTGAGCCTGTTTTTGTGCTTAACAATAGTAAGACAGGTGAGTTTTGTGCTCCTT TAACTTCTTTTGATTGGAATGATATTGAACCTAAAAGAATTGGTACTTGTAGTGTTGATACAACCTGTACGATTTGGGATATTGAAAAGGGTGCTGTTGA AACACAACTTATAGCTCATGATAAGGAAGTTTATGATATTGCTTGGGGTGAAGCAAGGGTTTTTGCTTCAGTTTCAGCTGATGGGTCAGTTAGGATTTTT GATTTAAGAGATAAGGAACATTCTACTATTATATATGAGAGTCCTAGACCTGATACACCCTTGTTGAGATTGGCTTGGAACAAGCAGGATTTGAGGTATA TGGCCACCACGTTGATGGATAGCAATAAAGTTGTGATCTTGGATATTAGGTCCCCAACAATACCTGTTGCGGAGTTGGAGAGGCATCGTTCGAGTGTGAA TGCTATTGCTTGGGCTCCGCAGAGTTGTTGTCATATTTGTTCTGCTGGTGATGATTCACAGGCTCTTATTTGGGAGTTGCCTACTGTGGCTGGACCTAAT GGGATTGATCCAATGTCCATGTGCTCTGCTGCTTCTGAAATTAACCAGCTTCAATGGTCTGCTGCACTGCCTGATTGGATTGCTATCGCGTTTTCAAATA AAATGCAGCTTTTAAAAGTTTGA
AA sequence Show only first row Show all	>Potri.015G002600.1 pacid=42775214 polypeptide=Potri.015G002650.1.p locus=Potri.015G002600 ID=Potri.015G002600.1.v4.1 annot-version=v4.1 MESSTQESHLRSENTVTYESPYPLYAMAISSTPSRTNQYQRIALGSFTEDYNNRIDIVSFDPETLSVKTHQNLSLEHPYPPTKLMFSPSSLHKSNDLLAS SGDYLRLWEVRDSASIEPVFVLNNSKTGEFCAPLTSFDWNDIEPKRIGTCSVDTTCTIWDIEKGAVETQLIAHDKEVYDIAWGEARVFASVSADGSVRIF DLRDKEHSTIIYESPRPDTPLLRLAWNKQDLRYMATTLMDSNKVVILDIRSPTIPVAELERHRSSVNAIAWAPQSCCHICSAGDDSQALIWELPTVAGPN GIDPMSMCSAASEINQLQWSAALPDWIAIAFSNKMQLLKV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24520		ATTTG1, URM23, ...	UNARMED 23, TRANSPARENT TESTA ...		Potri.015G002600 [exp]	0	1
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Potri.015G002800 [exp]	5.91	0.7852
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.008G128500 [exp]	8.12	0.8392	MYB194
AT1G01980		ATSEC1A	FAD-binding Berberine family p...		Potri.011G158500 [exp]	10.95	0.8279
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.014G140700 [exp]	13.67	0.7640
AT5G40190			RNA ligase/cyclic nucleotide p...		Potri.001G350300 [exp]	25.88	0.7734
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Potri.009G095100 [exp]	37.86	0.7866
AT4G09830			Uncharacterised conserved prot...		Potri.002G064800 [exp]	41.55	0.6888
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Potri.012G006300 [exp]	43.26	0.7621
AT3G02420			unknown protein		Potri.017G110600 [exp]	43.49	0.7088
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Potri.009G095400 [exp]	51.84	0.7692

Compare expression of checked genes

Potri.015G002600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.