Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NAC147
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71930 71 / 2e-13 NAC VND7, ANAC030 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) AT3G10480 67 / 8e-12 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT3G10490 66 / 2e-11 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT5G62380 64 / 6e-11 NAC ANAC101, VND6 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) AT3G17730 62 / 1e-10 NAC ANAC057 NAC domain containing protein 57 (.1) AT3G03200 62 / 3e-10 NAC ANAC045 NAC domain containing protein 45 (.1) AT5G46590 61 / 3e-10 NAC ANAC096 NAC domain containing protein 96 (.1) AT5G04410 61 / 5e-10 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) AT1G12260 60 / 1e-09 NAC ANAC007, VND4, EMB2749 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) AT5G17260 60 / 1e-09 NAC ANAC086 NAC domain containing protein 86 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G027900 [exp] 281 / 7e-92 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.006G028300 [exp] 195 / 6e-58 AT3G10480 74 / 5e-14 NAC domain containing protein 50 (.1.2.3) Potri.006G028700 [exp] 159 / 7e-45 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.006G029200 [exp] 151 / 3e-43 AT3G10480 67 / 8e-13 NAC domain containing protein 50 (.1.2.3) Potri.006G028900 [exp] 144 / 6e-40 AT3G10480 71 / 8e-14 NAC domain containing protein 50 (.1.2.3) Potri.014G163600 [exp] 78 / 2e-15 AT5G62380 58 / 3e-09 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.006G231300 [exp] 77 / 4e-15 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.008G081500 [exp] 66 / 7e-12 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.001G220500 [exp] 66 / 1e-11 AT1G77450 66 / 4e-12 NAC domain containing protein 32 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033676 [exp] 96 / 4e-21 AT3G10480 72 / 4e-13 NAC domain containing protein 50 (.1.2.3) Lus10014342 [exp] 67 / 6e-13 AT3G10490 51 / 5e-08 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10010294 [exp] 69 / 3e-12 AT5G46590 59 / 1e-09 NAC domain containing protein 96 (.1) Lus10008240 [exp] 68 / 3e-12 AT1G33060 50 / 1e-06 NAC 014 (.1.2) Lus10023537 [exp] 68 / 3e-12 AT3G10490 331 / 2e-110 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10008200 [exp] 66 / 5e-12 ND 43 / 6e-05 Lus10037939 [exp] 66 / 1e-11 AT3G10490 415 / 2e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10033699 [exp] 66 / 2e-11 AT3G04060 49 / 6e-06 NAC domain containing protein 46 (.1) Lus10038670 [exp] 66 / 4e-11 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10042284 [exp] 64 / 4e-11 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.015G002900.1 pacid=42775974 polypeptide=Potri.015G002900.1.p locus=Potri.015G002900 ID=Potri.015G002900.1.v4.1 annot-version=v4.1 ATGCAAAACAGCCCTTCTCGCCTTCCTCCTGGATACAAATTCCTCCCCACTGATGAAGAATTGATCGGCTTTTATCTAGACAGGAAAGTCAATGGAGGTT TGCCTGCCGAATATGCTAGCTTGTTCAAGGACTACAATATTTATGGCGAAGAAGAACCCTGGGAGATCTTCGACAGGTTTGAAGGTCACAAGTCAGGTGA TAATGGCCTCTACTTTTTTACAACACTAAGTAAGAAAACGGTCAATTGTACTAAAAACAAGAACAGAAAGGTTGGTAAGAATGGCGGCACATGGCATGGT GACGGCGGAGAAGAAGTGAGTACTAGGGAAGGAGCTGTTATAGGAATGAAAAACAGATTCCGTTACAAGAACAAGCGACAACCGAACCATGATGGTTGGA TAATGCTGCAGTATGGTTCAGAATTGATTTCTGAAAATATTGTGATCTCTCAACTCAAGACAAAGGAATCGAAGAAAAGGAAGTTGATGGACCTTTCAGA AATTGTTGGAGTTGCTGAAGATGAGGATATAATCCAGATTAGCCAAAGATTTAAAAATCTTCCAGTAATCAACTCAGAACCTACAAGGTCACAAGATCAA CAACCCCACCAGATTATCCAGAATCAGGAGACGTGGCTTGAGGCAGCAACGGCTCCAGTTCAGAACATGGAGCCTGAGTTATCGGCAATCGTCAACCGGG GAGCTAAACTGTCACAAGATCAAGAACTGCAGCAGATTGCTGAAAATGTGGATACGTGGCTTCAGGCGGGTGTTGATTCATGGGAGGATGATGCGGGTTG CGCCACTGAAGATTCTTTCACCAACATTGATCCTGCAGCGCAAGTGGAGCCTGGCCAAGTAAACTTCACTAAAGAACCAACTGTTACTGAAAATCTGGAG ACAGAGCTTGAGGCAGGAATTGTTCGAAAAGAGGATGGTGTTGTTGAAGATGAAGATATTTTTCATGATTTGACAGATATTGTCAGCAATGAACTTGCCT TTCAAGTGGGGCCTGATCAGCAATTAGACTTCATTCAAGAATCAACTATTAGCGAAAATCAACAGATGGCGCTTGCAAGTTTCAATAATGATCACGCGAA AGAAACTATTTCAGATAAGCTGGACGATATTGAGATGGCGGATTACTTAGAATCTATCTTCAATGGTTATCATATCAGCCAGATCATTCAGGATCTCGAC CAGTTTATGCCGAGTCTCGACGACAGTCCAGCTGAAGAATCAGGAGACGGGGCTTGA
AA sequence Show only first row Show all	>Potri.015G002900.1 pacid=42775974 polypeptide=Potri.015G002900.1.p locus=Potri.015G002900 ID=Potri.015G002900.1.v4.1 annot-version=v4.1 MQNSPSRLPPGYKFLPTDEELIGFYLDRKVNGGLPAEYASLFKDYNIYGEEEPWEIFDRFEGHKSGDNGLYFFTTLSKKTVNCTKNKNRKVGKNGGTWHG DGGEEVSTREGAVIGMKNRFRYKNKRQPNHDGWIMLQYGSELISENIVISQLKTKESKKRKLMDLSEIVGVAEDEDIIQISQRFKNLPVINSEPTRSQDQ QPHQIIQNQETWLEAATAPVQNMEPELSAIVNRGAKLSQDQELQQIAENVDTWLQAGVDSWEDDAGCATEDSFTNIDPAAQVEPGQVNFTKEPTVTENLE TELEAGIVRKEDGVVEDEDIFHDLTDIVSNELAFQVGPDQQLDFIQESTISENQQMALASFNNDHAKETISDKLDDIEMADYLESIFNGYHISQIIQDLD QFMPSLDDSPAEESGDGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71930	NAC	VND7, ANAC030	Arabidopsis NAC domain contain...		Potri.015G002900 [exp]	0	1	NAC147
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Potri.014G190000 [exp]	26.77	0.7641
AT3G45850			P-loop containing nucleoside t...		Potri.014G170950 [exp]	113.05	0.7194
					Potri.005G038250 [exp]	130.73	0.6904
AT4G00872			Plant invertase/pectin methyle...		Potri.007G068300 [exp]	163.46	0.6984

Compare expression of checked genes

Potri.015G002900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.