Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45140 1827 / 0 NRPC2 nuclear RNA polymerase C2 (.1) AT4G21710 720 / 0 NRPB2, EMB1989 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) AT3G23780 470 / 2e-146 NRPE2, DMS2, DRD2, NRPD2a DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) AT3G18090 442 / 5e-137 NRPD2B nuclear RNA polymerase D2B (.1) AT1G29940 370 / 1e-109 NRPA2 nuclear RNA polymerase A2 (.1) ATCG00190 162 / 2e-40 ATCG00190.1, RPOB RNA polymerase subunit beta (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G043200 [exp] 721 / 0 AT4G21710 2271 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Potri.018G019100 [exp] 486 / 5e-152 AT3G23780 1694 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Potri.001G030750 [exp] 409 / 1e-123 AT1G29940 1674 / 0.0 nuclear RNA polymerase A2 (.1) Potri.013G142232 [exp] 160 / 9e-40 ATCG00190 2015 / 0.0 RNA polymerase subunit beta (.1) Potri.006G263900 [exp] 98 / 2e-22 AT3G23780 253 / 5e-77 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028778 [exp] 1821 / 0 AT5G45140 1711 / 0.0 nuclear RNA polymerase C2 (.1) Lus10017504 [exp] 1755 / 0 AT5G45140 1652 / 0.0 nuclear RNA polymerase C2 (.1) Lus10015446 [exp] 709 / 0 AT4G21710 2298 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Lus10011182 [exp] 705 / 0 AT4G21710 2293 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Lus10011322 [exp] 476 / 5e-156 AT5G45140 468 / 2e-153 nuclear RNA polymerase C2 (.1) Lus10026157 [exp] 417 / 2e-126 AT1G29940 1574 / 0.0 nuclear RNA polymerase A2 (.1) Lus10027166 [exp] 288 / 1e-80 AT3G23780 1435 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Lus10039677 [exp] 255 / 1e-69 AT3G23780 696 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Lus10012207 [exp] 140 / 3e-39 AT5G45140 150 / 6e-44 nuclear RNA polymerase C2 (.1) Lus10039408 [exp] 128 / 2e-32 AT5G45140 129 / 9e-34 nuclear RNA polymerase C2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0410 [poplar] [flax] LEF-8-like PF00562 [poplar] [flax] RNA_pol_Rpb2_6 RNA polymerase Rpb2, domain 6 CL0410 [poplar] [flax] PF04560 [poplar] [flax] RNA_pol_Rpb2_7 RNA polymerase Rpb2, domain 7
Representative CDS sequence Show only first row Show all	>Potri.015G003000.5 pacid=42775636 polypeptide=Potri.015G003000.5.p locus=Potri.015G003000 ID=Potri.015G003000.5.v4.1 annot-version=v4.1 ATGGTTGTCGTGCAAGCCGATTCTCTGTCTGAGGAGAACGTTGTTGACCATTTAATTGACAAGCAAAAGCATGCCGCTGCACCAGTAAAATCCGCCGTCG ACAAATTCCAGCTTCTCCCTGAATTTTTAAAGGGGAGAGGGTTAGTGAAGCAGCACTTAGATTCGTTTAATTATTTTATAAATATTGGAATCAAGAAGAT TGTGCGTGCCAATGATCGGATTGTGTCCACAGTTGATCCTAGTCTTTATCTGAGGTTTACAGATGTTAAGATTGGAAAGCCTTCTATGGTGGTCGATGCT ATTAGTGAACAAATTACTCCTCATATGTGTCGCTTATCTGACACGACGTATGCTGCACCGATATTGGTTAATATAGAGTATATTTCAGGAAGCCATGGTC GGAAGGAGAAGATGATAAAGAATGATGTTGTCATTGGAAGAATGCCCATAATGTTACGAAGTTGTTGCTGTGTGTTGTATGGAAAAAATGAAGCTGAACT TGCGAGACTTGGTGAGTGCCCCCTTGACCCTGGAGGATATTTTGTTGTCAAAGGAACTGAGAAGGTGATTTTAATACAAGAGCAACTTTCAAAGAACAGA ATCATTATTGATAATGACAAGAAAGGGAACATAAATGCATCTGTTACAAGTAGCACCGAGGCAACAAAAAGCAAAACAGTCATTCTGATGGAAAAGGAGA AGATGTATTTATGTCTCAACCAGTTTGCAAAAAAGATTCCTATAATGGTGGTAATGAAGGCTATGGGGATGGAGAGCGACCAAGAGGTGGTACAGATGGT AGGAAGAGATCCTCGATATAGCGCGTTGCTTTTGCCCTCTATTGAGGAATGTGCAAGTCATGGTGTTTACACACAGCAACAAGCCTTGGAATATCTTGAA GCAATGGTGAAGAGGTCTACATACTCTAGTTCATCGACTGAAAAGCAGGAAAATAGAGCTTTGGCCATTCTTCGAGATGTATTTATTGCTAATGTTCCGG TGCGCAAGAATAATTTCCGCCCAAAATGTATATATGTAGCGGTAATGTTGAGAAGGATGATGGAGGCTTTATTAAACAAGGATGCAATGGATGACAAGGA TTATGTGGGTAACAAGCGATTGGAGCTATCAGGCCAATTGATTTCTCTGCTTTTTGAGGATTTGTTTAAGACGATGATAACTGAGGTCCAGAAAACAGCA GACACTCTGCTAGTAAAACAAAACCGATCTAGCCGGTTTGACTTTTCTCAATATATAGTTAGAGATAGTATTACCAATGGGCTTGAAAGAGCACTCTCTA CTGGAAACTGGGATGTCAAACGGTTTAGGATGAACAGGAAAGGCGTGACACAGGTATTAGTCAGGTTATCCTATATGGCATCGTTGGGCCACATGACCAG AATTTCACCACAATTTGAGAAGTCCAGGAAAGTAAGTGGACCCAGGGCATTGCAACCTAGTCAGTGGGGTATGCTTTGCCCTTGTGATACTCCAGAAGGA GAAGCTTGTGGACTTGTGAAGAACTTGGCCTTAATGACTCATGTTACAACTGATGAAGAAGAGAGCCCATTAATCTCTCTGTGCAAGTGTTTGGGTGTAG AAGACTTGGAACTTCTCTCTGGAGAAGAGCTTCACACGCCAAACTCTTTTCTGGTTATATTTAATGGACTTATTCTTGGGAAGCACAGAAGGCCACAGCA ATTTGCAAATGCCATGAGAAAGTTGCGAAGAGCTGGCAAAATTGGCGAGTTTGTAAGTGTCTTTGTGAATGAGAAGCAGCGTGCTGTGTACATTGCTTCT GATGGAGGTCGAGTTTGTCGTCCGCTGGTTATTGCAGACAAAGGTGTATCAAGGATTAAAGAACATCATATGAGAGAGTTAATGGATGGAGCCCGCACTT TTGATGACTTCTTACATGAGGGATTGATTGAGTATCTTGATGTCAATGAAGAGAACAATGCTTTGATTGCTTTGTATGAATGGGAGGCCACTCCTGAGAC AACCCATATTGAGATAGAGCCTTTCACGATATTAGGTGTTGTTGCTGGGTTAATTCCTTATCCTCATCATAATCAGTCACCAAGAAATACATATCAGTGC GCTATGGGGAAGCAAGCTATGGGAAACATTGCATACAACCAGTTAGGCCGTATGGACTCGTTACTTTACCTATTGGTGTATCCTCAACGGCCTTTATTGA CAACAAGAACAATTGAACTGGTTGGATATGATAAGCTTGGGGCTGGTCAGAATGCAACAGTTGCAGTTATGAGTTATAGTGGCTATGACATAGAGGATGC AATAGTCATGAACAAGGCCTCTCTAGATCGTGGTTTTGGTCGATGTATTGTTTTGAAGAAATACACTTGCACCAATCAAAAGTATGAGAATGGTGCATCA GACAGAATCTTAAGGCCACGAAAAAATGAAGAAAGAGAGAGGGTGTTGGATGATGATGGACTTGCTGCTCCTGGGGAAATTATTAGGCATGGTGATATCT ATATAAATAAGGAGTCCCCAATTGAAACAAGGGGGCCTTTAAAGTCTGCAGCAGCTTTAGCAGATGTAAAATATCGGCCTTGTGCCCAAATATTCAAAGG TACTGAAGGGGAGTCATGTGTAGTTGATAGAGTTGCTCTTTGCTCTGATAAAAACAACAATCTATGTATCAAATATAAAATCCGCCATACTCGTAGACCA GAGGTTGGTGACAAATTTAGTAGCAGACATGGGCAAAAAGGTGTTTGTGGAACAATCATTCAACAAGAAGATTTCCCATTTTCTGAACGTGGTATTTGCC CTGATTTGATCATGAACCCGCATGGGTTTCCCAGTCGAATGACTGTTGGGAAGATGATAGAGCTTCTTGGGGGTAAAGCTGGAGTTTCATGTGGTAGATT TCATTATGGTAGTGCATTTGGAGAACCAAGTGGTCATGCAGACAGGGTTGAAGCTATAAGTGAAACACTTGTTAAGCATGGCTTTAGCTACAATGGCAAG GACTTCATTTATTCAGGTATCACAGGTTGTCCTCTGCAGGCGTATATTTTCATGGGGCCAATTTACTACCAGAAGTTAAAACATATGGTCTTAGATAAAA TGCATGCTCGAGGTAGTGGACCACGCGTCATGCTAACCAGACAGCCTACTGATGGGAGAGCTCGAAATGGAGGTCTTCGAGTGGGAGAAATGGAAAAGGA TTGTTTGGTTGCATATGGCACTAGCATGTTGCTTTATGAGCGCCTAATGGTTTCCAGTGATCAATTTGAAGCTCAGGTTTGCAGAGCTTGTGGTTTATTA GGCTATTACAATCAGAAGCTGAAAGCTGCAATGTGTACCACGTGTAAAAATGGGGATAAAGTTTCTACTATGAAACTACCGTATGCTTGCAAGCTCTTGA TTCAGGAACTTCAGTCAATGAATATTGTTCCTCGCCTAAAACTGGCCGAAGCATGA
AA sequence Show only first row Show all	>Potri.015G003000.5 pacid=42775636 polypeptide=Potri.015G003000.5.p locus=Potri.015G003000 ID=Potri.015G003000.5.v4.1 annot-version=v4.1 MVVVQADSLSEENVVDHLIDKQKHAAAPVKSAVDKFQLLPEFLKGRGLVKQHLDSFNYFINIGIKKIVRANDRIVSTVDPSLYLRFTDVKIGKPSMVVDA ISEQITPHMCRLSDTTYAAPILVNIEYISGSHGRKEKMIKNDVVIGRMPIMLRSCCCVLYGKNEAELARLGECPLDPGGYFVVKGTEKVILIQEQLSKNR IIIDNDKKGNINASVTSSTEATKSKTVILMEKEKMYLCLNQFAKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECASHGVYTQQQALEYLE AMVKRSTYSSSSTEKQENRALAILRDVFIANVPVRKNNFRPKCIYVAVMLRRMMEALLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEVQKTA DTLLVKQNRSSRFDFSQYIVRDSITNGLERALSTGNWDVKRFRMNRKGVTQVLVRLSYMASLGHMTRISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG EACGLVKNLALMTHVTTDEEESPLISLCKCLGVEDLELLSGEELHTPNSFLVIFNGLILGKHRRPQQFANAMRKLRRAGKIGEFVSVFVNEKQRAVYIAS DGGRVCRPLVIADKGVSRIKEHHMRELMDGARTFDDFLHEGLIEYLDVNEENNALIALYEWEATPETTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQC AMGKQAMGNIAYNQLGRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVLKKYTCTNQKYENGAS DRILRPRKNEERERVLDDDGLAAPGEIIRHGDIYINKESPIETRGPLKSAAALADVKYRPCAQIFKGTEGESCVVDRVALCSDKNNNLCIKYKIRHTRRP EVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADRVEAISETLVKHGFSYNGK DFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTDGRARNGGLRVGEMEKDCLVAYGTSMLLYERLMVSSDQFEAQVCRACGLL GYYNQKLKAAMCTTCKNGDKVSTMKLPYACKLLIQELQSMNIVPRLKLAEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Potri.015G003000 [exp]	0	1
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.010G145150 [exp]	2.64	0.8835
AT2G31340		EMB1381	embryo defective 1381 (.1)		Potri.002G224300 [exp]	2.82	0.8821
AT3G16010			Pentatricopeptide repeat (PPR-...		Potri.001G180000 [exp]	3.00	0.8819
AT5G61800			Pentatricopeptide repeat (PPR)...		Potri.012G110800 [exp]	3.46	0.9001
AT1G11900			Tetratricopeptide repeat (TPR)...		Potri.001G273100 [exp]	6.00	0.8881
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Potri.006G055300 [exp]	6.00	0.8904
AT1G29940		NRPA2	nuclear RNA polymerase A2 (.1)		Potri.001G030750 [exp]	6.32	0.8892
AT1G68930			pentatricopeptide (PPR) repeat...		Potri.010G136200 [exp]	7.14	0.8941
AT3G26540			Tetratricopeptide repeat (TPR)...		Potri.002G075300 [exp]	9.38	0.8781
AT1G71420			Tetratricopeptide repeat (TPR)...		Potri.013G098800 [exp]	10.48	0.8801

Compare expression of checked genes

Potri.015G003000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.