Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	COMT1,Pt-OMT1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54160 583 / 0 ATOMT1 O-methyltransferase 1 (.1) AT1G77520 345 / 3e-117 O-methyltransferase family protein (.1) AT1G51990 338 / 9e-115 O-methyltransferase family protein (.1.2) AT1G33030 328 / 3e-111 O-methyltransferase family protein (.1) AT1G77530 315 / 2e-105 O-methyltransferase family protein (.1) AT1G63140 311 / 4e-104 O-methyltransferase family protein (.1.2) AT5G53810 294 / 2e-97 O-methyltransferase family protein (.1) AT1G21130 290 / 7e-96 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT1G21100 288 / 4e-95 IGMT1 indole glucosinolate O-methyltransferase 1, O-methyltransferase family protein (.1) AT1G21110 286 / 2e-94 IGMT3 indole glucosinolate O-methyltransferase 3, O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G006400 [exp] 689 / 0 AT5G54160 605 / 0.0 O-methyltransferase 1 (.1) Potri.014G106600 [exp] 420 / 9e-147 AT5G54160 416 / 3e-145 O-methyltransferase 1 (.1) Potri.002G180600 [exp] 412 / 5e-144 AT5G54160 413 / 2e-144 O-methyltransferase 1 (.1) Potri.002G180433 [exp] 411 / 9e-144 AT5G54160 412 / 4e-144 O-methyltransferase 1 (.1) Potri.002G180500 [exp] 411 / 2e-143 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180466 [exp] 411 / 2e-143 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.001G451100 [exp] 399 / 6e-139 AT5G54160 384 / 7e-133 O-methyltransferase 1 (.1) Potri.002G180700 [exp] 394 / 2e-137 AT5G54160 393 / 8e-137 O-methyltransferase 1 (.1) Potri.011G150500 [exp] 378 / 1e-130 AT5G54160 364 / 2e-125 O-methyltransferase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032929 [exp] 622 / 0 AT5G54160 601 / 0.0 O-methyltransferase 1 (.1) Lus10015576 [exp] 613 / 0 AT5G54160 595 / 0.0 O-methyltransferase 1 (.1) Lus10005133 [exp] 386 / 1e-133 AT5G54160 381 / 1e-131 O-methyltransferase 1 (.1) Lus10002667 [exp] 384 / 9e-133 AT5G54160 368 / 1e-126 O-methyltransferase 1 (.1) Lus10002669 [exp] 371 / 6e-128 AT5G54160 376 / 5e-130 O-methyltransferase 1 (.1) Lus10006146 [exp] 348 / 5e-119 AT5G54160 338 / 5e-115 O-methyltransferase 1 (.1) Lus10009442 [exp] 306 / 4e-102 AT1G33030 320 / 9e-108 O-methyltransferase family protein (.1) Lus10014825 [exp] 246 / 4e-79 AT1G33030 270 / 8e-89 O-methyltransferase family protein (.1) Lus10014400 [exp] 242 / 4e-77 AT3G53140 562 / 0.0 O-methyltransferase family protein (.1) Lus10023892 [exp] 237 / 2e-75 AT3G53140 560 / 0.0 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00891 [poplar] [flax] Methyltransf_2 O-methyltransferase domain CL0123 [poplar] [flax] HTH PF08100 [poplar] [flax] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.015G003100.4 pacid=42776013 polypeptide=Potri.015G003100.4.p locus=Potri.015G003100 ID=Potri.015G003100.4.v4.1 annot-version=v4.1 ATGGGTTCAACAGGTGAAACTCAGATGTCTCCAGCTCAGATATTAGATGAAGAAGCGAATTTTGCCATGCAACTGATCAGTTCTTCAGTGCTACCTATGG TCCTCAAAACAGCCATTGAACTTGACCTTCTTGAAATCATGGCTAAAGCTGGCCCTGGTGCTCTCTTGTCCCCATCCGATATAGCTTCTCATCTCCCTAC CAAAAACCCTGATGCACCTGTCATGTTAGATCGTATCTTGCGCCTTCTGGCTAGTTACTCCATTCTTATTTGCTCTCTAAGAGATCTTCCTGATGGGAAA GTTGAGAGACTCTATGGTCTTGCTTCTGTTTGTAAGTTCTTGACCAAGAATGAAGATGGTGTCTCTGTTAGCCCTCTCTGTCTCATGAACCAGGACAAGG TCCTCATGGAAAGTTGGTATCATTTGAAAGACGCGATTCTTGAAGGAGGAATTCCATTTAACAAGGCCTATGGAATGACTGCATTTGAATATCATGGCAC GGATCCAAGATTCAACAAGGTTTTCAACAAGGGAATGTCTGACCATTCTAAAATTGCCATGAAGAAGATTCTTGAGACCTACAAAGGCTTTGAAGGCCTC GCATCCTTGGTGGATGTTGGTGGCGGGACTGGTGCTGTGCTTAGCACAATCGTCTCCAAGTACCCTTCAATTAAGGGCATCAACTTTGATTTGCCTCATG TCATTGCGGATGCCCCAGCTTTCCCTGGTGTGGAGAATGTTGGTGGTGACATGTTTGTTAGTGTGCCCAAAGCAGATGCTGTTTTCATGAAGTGGATATG TCATGATTGGAGCGATGAACACTGCTTAAGATTCTTGAAGAACTGCTATGATGCGCTGCCGGAAAACGGGAAAGTGATCCTTGTTGAATGCATTCTCCCT GTGGCTCCTGACACAAGTCTTGCCACCAAGGGAGTCATGCACGTTGATGCCATAATGCTGGCACATAACCCCGGAGGAAAAGAGAGGACCGAAAAGGAAT TTGAGGGCTTGGCCAGGGGAGCTGGCTTCAAGGGTTTCGAAGTGATGTGCTGTGCATTCAATACGTACGTGATTGAATTCCGCAAGCAGGCCTAA
AA sequence Show only first row Show all	>Potri.015G003100.4 pacid=42776013 polypeptide=Potri.015G003100.4.p locus=Potri.015G003100 ID=Potri.015G003100.4.v4.1 annot-version=v4.1 MGSTGETQMSPAQILDEEANFAMQLISSSVLPMVLKTAIELDLLEIMAKAGPGALLSPSDIASHLPTKNPDAPVMLDRILRLLASYSILICSLRDLPDGK VERLYGLASVCKFLTKNEDGVSVSPLCLMNQDKVLMESWYHLKDAILEGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSKIAMKKILETYKGFEGL ASLVDVGGGTGAVLSTIVSKYPSIKGINFDLPHVIADAPAFPGVENVGGDMFVSVPKADAVFMKWICHDWSDEHCLRFLKNCYDALPENGKVILVECILP VAPDTSLATKGVMHVDAIMLAHNPGGKERTEKEFEGLARGAGFKGFEVMCCAFNTYVIEFRKQA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.015G003100 [exp]	0	1	COMT1,Pt-OMT1.2
AT1G75280			NmrA-like negative transcripti...		Potri.005G228700 [exp]	2.44	0.9019	PCBER7
AT5G35770		SAP	STERILE APETALA, Transducin/WD...		Potri.014G166400 [exp]	3.00	0.8698	SAP.1
AT4G17260			Lactate/malate dehydrogenase f...		Potri.008G135920 [exp]	3.46	0.8717
AT2G17070			Arabidopsis protein of unknown...		Potri.009G142500 [exp]	8.48	0.8063
AT3G21680			unknown protein		Potri.014G153200 [exp]	11.31	0.7842
AT4G17260			Lactate/malate dehydrogenase f...		Potri.003G111201 [exp]	12.24	0.8348
AT3G51160		GMD2, MUR_1, MU...	MURUS 1, GDP-D-MANNOSE-4,6-DEH...		Potri.005G116200 [exp]	13.63	0.8558	GMD1.2
AT3G62720		ATXT1, XXT1	XYG XYLOSYLTRANSFERASE 1, xylo...		Potri.010G025100 [exp]	15.74	0.7964
AT3G53380			Concanavalin A-like lectin pro...		Potri.016G087800 [exp]	16.43	0.8246
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.012G047600 [exp]	21.00	0.8121	TUB11

Compare expression of checked genes

Potri.015G003100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.