Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05260 291 / 1e-97 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT5G51890 283 / 2e-94 Peroxidase superfamily protein (.1) AT5G42180 283 / 3e-94 PER64 peroxidase 64, Peroxidase superfamily protein (.1) AT5G15180 278 / 3e-92 Peroxidase superfamily protein (.1) AT5G06730 276 / 2e-91 Peroxidase superfamily protein (.1) AT4G36430 276 / 2e-91 Peroxidase superfamily protein (.1) AT3G21770 275 / 3e-91 Peroxidase superfamily protein (.1) AT3G01190 273 / 3e-90 Peroxidase superfamily protein (.1) AT4G11290 273 / 3e-90 Peroxidase superfamily protein (.1) AT2G18150 272 / 8e-90 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G006800 [exp] 551 / 0 AT1G05260 291 / 2e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.015G003600 [exp] 529 / 0 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122100 [exp] 297 / 1e-99 AT1G05260 496 / 3e-178 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 292 / 9e-98 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 292 / 9e-98 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 292 / 9e-98 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 292 / 9e-98 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 291 / 2e-97 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.005G108900 [exp] 288 / 2e-96 AT5G42180 442 / 2e-157 peroxidase 64, Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032926 [exp] 437 / 8e-155 AT1G05260 292 / 5e-98 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10015580 [exp] 337 / 3e-116 AT1G05260 221 / 5e-71 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10028736 [exp] 317 / 5e-108 AT1G05260 266 / 4e-88 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10028688 [exp] 311 / 3e-105 AT4G11290 265 / 5e-87 Peroxidase superfamily protein (.1) Lus10009990 [exp] 292 / 9e-98 AT2G41480 233 / 2e-74 Peroxidase superfamily protein (.1) Lus10038054 [exp] 290 / 9e-97 AT5G51890 264 / 7e-87 Peroxidase superfamily protein (.1) Lus10038055 [exp] 288 / 8e-96 AT2G41480 243 / 2e-78 Peroxidase superfamily protein (.1) Lus10039680 [exp] 285 / 4e-95 AT1G05260 458 / 3e-163 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10027164 [exp] 279 / 1e-92 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10039681 [exp] 277 / 6e-92 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.015G003500.1 pacid=42775798 polypeptide=Potri.015G003500.1.p locus=Potri.015G003500 ID=Potri.015G003500.1.v4.1 annot-version=v4.1 ATGATGATGAGTTCCAAGAAGCTAACTCAGCTATCTGTCATTTGTTGGGTGGCTGTTTTGTTTTGTCAAAGTGTCCAATCTCAGCTTCAAGTAGGGTTTT ATAGAAATTCATGCAGGAGGGCTGAGTTGATTGTTAGAAATGCTGTTAGAGATGGTATCAACAAGGATAGAGGTGTAGCTGCTGGCCTTGTGAGAATGCA CTTTCATGACTGTTTTGTTAGGGGTTGTGAAGGTTCTGTGCTTCTCGACTCCACCTCATCAAACACAGCAGAAAAGGACTCTCCTGCCAACAACCCTAGT CTGCGTGGTTATGAAGTCGTCGACGATGCAAGGGCTAAACTAGAAGCCGAATGTCGAGGAGTCGTTTCATGTGCTGATATTCTGGCATTTGCAGCAAGGG ATAGCTTTGATTTAACTGGAGGGATTAGCTATGATGTTCCGGCTGGAAGAAGAGATGGCACAGTTTCGCTAGTCGCAGAGACTTCAGACTTACCTCCTCC CACCTTAAATGTTGATCAACTCACTCAAAACTTTGCAAAGAAGGGTTTATCACAAGAAGAAATGGTCACACTATCCGGAGGACATACCATCGGTCGTTCA CATTGCACTTCCTTCAGAGATAGATTATACAACTTCAGTGGAACAAATAGCCAAGACCCAAGCTTGGATGCCACATATGCAGCCAGTTTGAAGCAGAAGT GCCCACAAGCTAGTACAGATACTAACTTGGTGGTGCCAATGGACACTATTACTCCAACCATTAGTGATGTAAGTTACTACAGAGATATCCTAGCAAACCG AGGCTTGTTCACATCAGATCAAACTCTCTTGTCAAACACAGCAACAGCAAGTCAAGTGAATTCGAATTCGAGGAGTCCCTTAGGCTGGAAGAGAAAGTTT GCTGCAGCAATGGTAAAAATGGGCCAAATTGAAGTTTTGACTGGTAACACAGGAGAGATTAGGGCAAACTGTAGGGTGATCAACAGCTAA
AA sequence Show only first row Show all	>Potri.015G003500.1 pacid=42775798 polypeptide=Potri.015G003500.1.p locus=Potri.015G003500 ID=Potri.015G003500.1.v4.1 annot-version=v4.1 MMMSSKKLTQLSVICWVAVLFCQSVQSQLQVGFYRNSCRRAELIVRNAVRDGINKDRGVAAGLVRMHFHDCFVRGCEGSVLLDSTSSNTAEKDSPANNPS LRGYEVVDDARAKLEAECRGVVSCADILAFAARDSFDLTGGISYDVPAGRRDGTVSLVAETSDLPPPTLNVDQLTQNFAKKGLSQEEMVTLSGGHTIGRS HCTSFRDRLYNFSGTNSQDPSLDATYAASLKQKCPQASTDTNLVVPMDTITPTISDVSYYRDILANRGLFTSDQTLLSNTATASQVNSNSRSPLGWKRKF AAAMVKMGQIEVLTGNTGEIRANCRVINS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.015G003500 [exp]	0	1
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.017G016600 [exp]	3.31	0.8462
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.015G104800 [exp]	4.47	0.8100
AT1G61600			Protein of unknown function (D...		Potri.004G106100 [exp]	10.24	0.8280
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.017G017100 [exp]	11.13	0.8288
AT4G22730			Leucine-rich repeat protein ki...		Potri.003G115100 [exp]	13.67	0.7801
AT4G12390		PME1	pectin methylesterase inhibito...		Potri.003G113700 [exp]	16.73	0.7802
AT5G44440			FAD-binding Berberine family p...		Potri.011G162856 [exp]	18.00	0.7594
AT5G64667		IDL2	inflorescence deficient in abs...		Potri.005G189900 [exp]	18.49	0.7870
AT5G48060			C2 calcium/lipid-binding plant...		Potri.001G271400 [exp]	19.97	0.7957
AT5G44170			S-adenosyl-L-methionine-depend...		Potri.001G148200 [exp]	23.45	0.8088

Compare expression of checked genes

Potri.015G003500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.