Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49490 108 / 1e-23 unknown protein AT1G33050 52 / 3e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G007000 [exp] 1783 / 0 AT3G49490 104 / 2e-22 unknown protein Potri.001G452300 [exp] 107 / 2e-23 AT1G33050 63 / 6e-10 unknown protein Potri.003G206701 [exp] 64 / 4e-12 AT3G49490 49 / 4e-08 unknown protein Potri.002G230100 [exp] 57 / 1e-09 AT3G49490 45 / 6e-07 unknown protein Potri.004G080501 [exp] 52 / 4e-08 ND / Potri.011G149601 [exp] 52 / 2e-06 AT1G33050 50 / 1e-05 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015581 [exp] 359 / 2e-104 AT3G49490 91 / 5e-18 unknown protein Lus10032925 [exp] 303 / 4e-84 AT3G49490 92 / 3e-18 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G003700.3 pacid=42776193 polypeptide=Potri.015G003700.3.p locus=Potri.015G003700 ID=Potri.015G003700.3.v4.1 annot-version=v4.1 ATGATGAATTATGGGGTTTCTTATGGTTATAATAATGGAGGTGGATCATCATCTTCCTCTTCAAATTTATCAGCTTCAGCCCCACCTTTCACTGTTGACA GGTCTGCAGCAAAATCCCTTTTGGATTTAACTGAAACCACTTATCCTGTTAGCTTGAATCCCTCCTTACACAATTGGGTTACCTCCAACTCTCACATTCC CAATTCAAGACCTGATCTCTTTCCCATTCCAAACCTGGAATTTGATTCCGTGCCTTCCCCACCTGCATTTGGATACTCCTCGCCTACCCAGATGCCATCT ATGAGCCACCCTCTTGTTTCGGCTTCCACTGATGCTGTTTTGTATGTTCAAGGTAATCCTAGCATTGTTGAAGCTGAACCATATTATCCGTCATCGTATG TTTCACCTGCAATTGCTAGTGATGGTTCCTTGAAGATCCCCAACCAATCTGGTTATGAATTATTGTCTACCTCTCATGTTGGAACATCTAATGGATCCTC TCGTGATGATTATAGTCAAAGCTTGGTAGTTTTAGAGCATCCTGCACAGTGGAGTGGCTTGTGGGAGGGAGTTACTGATTGGCATCAGAGCAAAAAAATG CAACTTGATGGAGGTTTTTCTGCGAAGGAGAATTTTATTAATCAAGTTTTTGAAGTATGCACCCAGCAGAAAACAAATGGGTTTTCTGCATTCAAGGATA TCAGCAAATGTGAAGAAACTTCCCTTGGAATCAACGTGGTTGGTAGGCAAACGCACACTGAGTCTGCAAGCACAGGACAGATGGATTATAAAGCTTTCCT TGGTGAAAAACCCAAGTTCATGCCTGCGGGTTATTCAACACCATCACCTTTGGTGTTTCCTTCAGTAGCACCACAAGCTTATCCTCAGGTACCATCCTCA AATGTAGTCAATTCTCCGATTAATCAAATGCCAGATGTCATTTTATATGGAAAATCCTCAAGGAAGCGTGATGCTAGTCCAAATGATAGTATGCCAGTGA CAAAGCCTTCACCTGTGGTTGTTGTTAGATCCCCAGGGCAAGATACATATTCATTTAAAAATATGAACACTGGTTGCGATGGTGATGAGAAGGGCAATAA TTCCTCTTCTGTGCAAGAGCCTAATCCATTTATTAGCTCTGAAGGAAAAGTTTTCTATGATTCTAGCCAAATTAATTTTCATCTGAAACAAAATGATGAT TACTTGGCAGAAATTTCCTCTAAAAACAATGAGTTGCCAAGCAACAAAAATATTTCTGTGGATTTCTTCGATCAACTTTTCAAAGCAAAAATGGACAATA AAGTTCTTCGTAGAAATCTAGATTTCTTCAATTTGGCTATGGATGGTCATGAAGCCATTGGTTCTGTAGAGAATACTTCTGAAAGTTTAGATCATTACAA CCCTGCTGTGGACTCACCATGCTGGAAAGGTGCTCCAGTTTCTCATCTATCTGCATTTGAAATTTCTGAGGTTGTGGACCCACTAATTCCAAAAAAGGTA GAAGCTTGCAATGGCTTGAGTCCTCAGGGCCCTCAAATCTTCCCTTCCGCTACTAATGATGCTGTAAAAGCCTGCCCTGAAAAACAAAGTAATATCTCTG TGCCCCTCAATCATGAGAGTCTGGAACATCAACAAGTCTCTTTGTTTAAGAGGCCTTTAGATGCTAAAGTGTTATTTAGAGAAGAAATTGATGATGCTGG GAAGTATGGACCCTACCAAAGGATACCAAGCTATTGTCATGAAGCTCAAATTTCTGATGTCATTGATGATGAAACTAGGAAAGAAAGTATCCTTTCTGAT TTTAACTCCCTGCACACTGAGCAGCGAAGTCTTGAAGACGGTGAATGGCCATCAAAGAAAAATTCTTATGTTGCAGATGTTAGGAGGAAAATCAATGATG ACCCTGATGATTGTTCATCTCACGTACCATTCCATGCTATAGAACAGGTCTTATGTTCGCCACCTTCATCAGAACATGCTCCTGCTCAGCACACCCAATC ACAGGGTGAAGAATCATTGTCAAAGATGCATGCACGGACACTTGTTGATACAATGCACAACCTCGCAGAATTGCTCCTATTTTACTCTTCGAATGACACT TGTGAGCTGAAGGATGAAGACTTTGATGTTCTTAAAGATGTGATCAACAATCTTGATATCTGTATATCGAAGAATTTGGAAAGGAAGATTTCAACACAAG AATCATTGATTCCTCAGCAAGCCACTTCTCAATTTCATGGAAAGTTATCTGATCTTTACAAGGGCCAACTTGAGTTTCAGCATTTTGAGGATGAGGAGGA GCATAAAATTGCGTCTGATAAGAGAAAGGAGAAACTGTCGAATTGGGCTTCCACAAGGTGTGCTGCAGATACAGTCAAAGATGATAACATGACACAGGCT ATAAAGAAGGTTCTTGCCAAGAATTTTCCGATCGAAGAAGAATCCGAGTCTCAAATTCTTCTGTATAGGAATCTATGGCTTGAAGCAGAAGCTTCATTGT GCTCTGTTAATTATATGGCTCGCTTTAATCGAATGAAGATTGAGATGGAAAAAGGCCACTCACAAAAAGCAAACGATTTTTCTTCTGCTGCCCCTGTTGT ACCAGAAAAATCTATGGTCTTGGAGAATCTTTCAAGGCCCAAGGTTTCATCTGACATATTGCCTGCTGATGATAAGGGCAGCCCTGTCCAAGATGTTTCT TTTCTAGATTCATCTATCTTAAGCAGAAACAGCCATTCAGATGATGTCATGGCCAGATTTCATATCTTAAAAAGCCGAGTTGATGACTCAAATTCTATGA GTACTTCAGCTGTGGAGAAATTATCAAGTTCCAAGGTTTCTCCTGATCTGAACCTGGTTGACAAATTGGCATGTGACACGAAAGATAGCACTAAGCCCAA TGTATCCATCCAGGATTCTCACATGTCGGGAACAAGCAGTAATGCTGATGATGTTAGCAGCCATGCAGATGATGTTATAGCTAGATTTCATATCTTAAAA TGCCGGGTTGACAACTCTAGTTCTGGGAATACCTCAGCTATGGAGAAATTGTCAAGTTCTAAGGTTTCTCCTGATCTGAACAAGGTTGACAAAATGGTAT ATGACACAAAAGATAGTACTAAGCCCCATATAACCATCCAGGATTCCCCCATGGCAGGAAGGAGCAGCCATGCAGATGATGTCATGGCCAGATTTCGTAC TTTAGAAGGCCGGGTTGACAACTGTAATTCTGTGAATATATCAGCCATGGAGAAATTGCCAAGTTCCAAGGTTTCTTCTAATCTGAGCAATGTTGGTAAA TTGACTGTCGAAGCAAAAGATAGCACAAAGCCAGATATAACCAAGCAGGATTCTCCTTTGCCAAGCACATCAAGTCATGCAGAAGATATTGAAGCTGCTA TTATGGCCAGATTGCTTATCTTGAAACACAGAGATGGCTGTTCAAGTTCCTTGGAAATGGAAGAGCATCAGCCAGAGAGCATTGATAATGGGTACACCAG TCTGAGAAGGGATGTTCCAATGGGTAAAGGTGGATTGAAAGACAGCATTTTGGATGTAAATATGGAACCTGTCATCCGAAATTATCCTGCTGACTCTGCT GAAGACAAATCAACTGTGAAAGAATTCCGGTTATTTGTCAATGATGATGCCAAGACCCAATCTAGCCTCACCAATAGGTTTGGAGACCAACCTCATGCTG GTTGGTATGATAGCTGTTCATCAGACTGGGAACATGTATTGAAGGAGGAGATTGTAGGGCAGGGTTATTTATGA
AA sequence Show only first row Show all	>Potri.015G003700.3 pacid=42776193 polypeptide=Potri.015G003700.3.p locus=Potri.015G003700 ID=Potri.015G003700.3.v4.1 annot-version=v4.1 MMNYGVSYGYNNGGGSSSSSSNLSASAPPFTVDRSAAKSLLDLTETTYPVSLNPSLHNWVTSNSHIPNSRPDLFPIPNLEFDSVPSPPAFGYSSPTQMPS MSHPLVSASTDAVLYVQGNPSIVEAEPYYPSSYVSPAIASDGSLKIPNQSGYELLSTSHVGTSNGSSRDDYSQSLVVLEHPAQWSGLWEGVTDWHQSKKM QLDGGFSAKENFINQVFEVCTQQKTNGFSAFKDISKCEETSLGINVVGRQTHTESASTGQMDYKAFLGEKPKFMPAGYSTPSPLVFPSVAPQAYPQVPSS NVVNSPINQMPDVILYGKSSRKRDASPNDSMPVTKPSPVVVVRSPGQDTYSFKNMNTGCDGDEKGNNSSSVQEPNPFISSEGKVFYDSSQINFHLKQNDD YLAEISSKNNELPSNKNISVDFFDQLFKAKMDNKVLRRNLDFFNLAMDGHEAIGSVENTSESLDHYNPAVDSPCWKGAPVSHLSAFEISEVVDPLIPKKV EACNGLSPQGPQIFPSATNDAVKACPEKQSNISVPLNHESLEHQQVSLFKRPLDAKVLFREEIDDAGKYGPYQRIPSYCHEAQISDVIDDETRKESILSD FNSLHTEQRSLEDGEWPSKKNSYVADVRRKINDDPDDCSSHVPFHAIEQVLCSPPSSEHAPAQHTQSQGEESLSKMHARTLVDTMHNLAELLLFYSSNDT CELKDEDFDVLKDVINNLDICISKNLERKISTQESLIPQQATSQFHGKLSDLYKGQLEFQHFEDEEEHKIASDKRKEKLSNWASTRCAADTVKDDNMTQA IKKVLAKNFPIEEESESQILLYRNLWLEAEASLCSVNYMARFNRMKIEMEKGHSQKANDFSSAAPVVPEKSMVLENLSRPKVSSDILPADDKGSPVQDVS FLDSSILSRNSHSDDVMARFHILKSRVDDSNSMSTSAVEKLSSSKVSPDLNLVDKLACDTKDSTKPNVSIQDSHMSGTSSNADDVSSHADDVIARFHILK CRVDNSSSGNTSAMEKLSSSKVSPDLNKVDKMVYDTKDSTKPHITIQDSPMAGRSSHADDVMARFRTLEGRVDNCNSVNISAMEKLPSSKVSSNLSNVGK LTVEAKDSTKPDITKQDSPLPSTSSHAEDIEAAIMARLLILKHRDGCSSSLEMEEHQPESIDNGYTSLRRDVPMGKGGLKDSILDVNMEPVIRNYPADSA EDKSTVKEFRLFVNDDAKTQSSLTNRFGDQPHAGWYDSCSSDWEHVLKEEIVGQGYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49490			unknown protein		Potri.015G003700 [exp]	0	1
AT2G42490			Copper amine oxidase family pr...		Potri.010G045600 [exp]	9.32	0.6334
AT3G13690			Protein kinase protein with ad...		Potri.014G038300 [exp]	18.30	0.6205
AT3G61960			Protein kinase superfamily pro...		Potri.014G107000 [exp]	18.52	0.6021
AT3G52030			F-box family protein with WD40...		Potri.009G056500 [exp]	25.39	0.5773
AT5G05570			transducin family protein / WD...		Potri.010G187700 [exp]	26.94	0.5955
AT2G02410			unknown protein		Potri.003G046600 [exp]	39.24	0.5956
AT5G10860		CBSX3	CBS domain containing protein ...		Potri.013G161500 [exp]	46.74	0.5595
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Potri.008G017800 [exp]	47.62	0.5151
AT5G12000			Protein kinase protein with ad...		Potri.018G146966 [exp]	63.24	0.5524
AT5G03960		IQD12	IQ-domain 12 (.1)		Potri.006G046000 [exp]	64.69	0.5367

Compare expression of checked genes

Potri.015G003700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.