Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49530 308 / 1e-98 NAC NTL6, ANAC062 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) AT5G24590 308 / 1e-98 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) AT4G35580 292 / 6e-92 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3) AT1G33060 276 / 2e-84 NAC ANAC014 NAC 014 (.1.2) AT1G65910 207 / 7e-59 NAC ANAC028 NAC domain containing protein 28 (.1) AT3G17730 196 / 1e-58 NAC ANAC057 NAC domain containing protein 57 (.1) AT5G17260 199 / 4e-57 NAC ANAC086 NAC domain containing protein 86 (.1) AT3G03200 196 / 6e-56 NAC ANAC045 NAC domain containing protein 45 (.1) AT3G10500 189 / 1e-52 NAC ANAC053 NAC domain containing protein 53 (.1) AT5G46590 181 / 3e-52 NAC ANAC096 NAC domain containing protein 96 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G007500 [exp] 726 / 0 AT5G24590 306 / 4e-98 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Potri.011G149300 [exp] 317 / 2e-99 AT1G33060 387 / 2e-125 NAC 014 (.1.2) Potri.001G452700 [exp] 283 / 8e-87 AT1G33060 415 / 7e-137 NAC 014 (.1.2) Potri.015G030200 [exp] 197 / 5e-59 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.010G174600 [exp] 193 / 2e-56 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.003G089800 [exp] 193 / 5e-56 AT4G17980 319 / 6e-109 NAC domain containing protein 71 (.1) Potri.017G139500 [exp] 199 / 2e-55 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.008G081500 [exp] 190 / 3e-55 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.004G081000 [exp] 197 / 6e-55 AT1G65910 465 / 4e-156 NAC domain containing protein 28 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015587 [exp] 398 / 1e-132 AT5G24590 306 / 9e-99 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10032919 [exp] 398 / 2e-132 AT5G24590 314 / 7e-102 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10008285 [exp] 304 / 6e-96 AT4G35580 421 / 2e-142 NAC transcription factor-like 9 (.1.2.3) Lus10033251 [exp] 295 / 2e-92 AT4G35580 410 / 5e-138 NAC transcription factor-like 9 (.1.2.3) Lus10010148 [exp] 255 / 4e-77 AT4G35580 325 / 9e-105 NAC transcription factor-like 9 (.1.2.3) Lus10042284 [exp] 199 / 4e-59 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 199 / 5e-59 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10007377 [exp] 202 / 1e-56 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10020794 [exp] 202 / 1e-55 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10030978 [exp] 186 / 1e-53 AT4G17980 273 / 6e-91 NAC domain containing protein 71 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.015G004100.1 pacid=42775294 polypeptide=Potri.015G004100.1.p locus=Potri.015G004100 ID=Potri.015G004100.1.v4.1 annot-version=v4.1 ATGGCTGTTTTGTCTATGAACTTCAATTCACTCCCTTTAGGCTTTAGATTCAGACCATCAGATAAAGAACTAGTAGATTACTACTTAAGACTCAAAATCA ATGGTGATGATGATGGAGTTAAAGTTATTCGTGAAATTGATGTCTGCAAATGGGAACCTTGGGACTTACCAGATTTGTCGATCATAAAGAACAAGGATCC AGAGTGGTTTTTTTTCTGTCCATTAGACAGGAAGTATCCAAATGGGTCGAGGCAGAATAGAGCAACAAATGCTGGGTATTGGAAGGCGACTGGTAACGAT AGGAAGATAAAGTCTGGAAATAATTTGATTGGAATGAAGAAGACTCTTGTTTTTTATACTGGACGCGCTCCTAAGGGGAAGAGGACTAATTGGGTCATGC ATGAGTATCGTGCTACTGAGGAGGAGCTTGATGGAACTAAACCTGGCCAGAGTTCCTTTGTCCTTTCTCGTTTGTTTAAGAAACAAGACGAGAGCATTGA AAGTCTGAACTGTGATGAAGCTGAAGCTACTGTTTCATCTCCGACCATGGTTCAATCGTCTCCGGAAGTTACACAATCTGATCAACCACTGATTGAAGCA TCTCCAGCAAATACAACTTCTGAGGTTGGAGCACCAGTGGAATTTCAAAGCAACAACTTTGGTGTCTGTGATGGAGGAGGTCAATCTGTTGGTCTGGGAG CTTCTGAGGGGGATTTACCAGTGGAAGAAGCCCTAAATTGGTTTATTGACTCCCCGCCAGAGCCTCTAGATTACAAAATCTTTTCACCACTGCACGTGCA GGTCCAATCAGCAATGGGATCTTCCTCCATGTTTTATCCCGGCAACAATGAATTGAGCGCCAGTAATACAGGGCTGCAATTTAATAATGGTGCAAATGAA ACGGATGCCGATACTTCTGATTTCGTTGATTCCATACTTCAGCAGCCAGTTGAGTTCTCACATGGGGAGTCTAGCATTCAGAACATTTCAACAATCCCAC ACGAGAGCCTTAAGAGTGTGGTCTTTGTTAAGGACTCTGGATCTTACAGCGGCTCAGATGTTGATCTGGCAACAATTAGAATTCAGCAAGAGTTTCAGGG CGCTGACCTTCTTGAAGGGAATGTTGACCAGAAGCCTTCTTCAAGTCTGTTTTCTGTTAGTAATGCGCATCAGCAGCAGATCAATCTGGGTCTGTTACAA AATGAACCTTATGAACAGAAAAGTTTAGCGTCAATTTCTGCCACAGACCAGTTCAATAACCTTAACAAAGGAAGCAGCAATACAAATCAAGTTGGTGGTA GTGACATTGATTGGGATGGAATCAGGATCAGGCCTCGCAATCCACGACGAAATCAACAATTTGACAGGAACCTCAATATGCAAGGTGATGCATCGAGAAG ATTTCTTCTGCAGAGTAAGCTCCAAGCTCATTTCAGCACAAAGTCTGGAGATTTGAGCTCTGAAGAAGTTGAATCTGAGTGTATTGTGACAAAGGATGCC AAAGTTACAGAAATGGAAACTCCTGTTTGTGGTGGTGATAATGGCATTGATGAACAGCACAAATCTTCCCTTGTTGAAGTTAGTGAAAGCCTTATAGACA CGAAGAATAATTGTTCTATACTGAGCAAGGTTTCATCTATGTTCTCGAAGGCTTCTTGTGCTCGCAATTCCTTCTGGCCAAATACAATGTTCAGGGTAGC TGTCTTCGCGGTTTTGTTCGCAGTCGTAGTGAGCAGATGGAGACACTTTATTCTCAATACTGCATAG
AA sequence Show only first row Show all	>Potri.015G004100.1 pacid=42775294 polypeptide=Potri.015G004100.1.p locus=Potri.015G004100 ID=Potri.015G004100.1.v4.1 annot-version=v4.1 MAVLSMNFNSLPLGFRFRPSDKELVDYYLRLKINGDDDGVKVIREIDVCKWEPWDLPDLSIIKNKDPEWFFFCPLDRKYPNGSRQNRATNAGYWKATGND RKIKSGNNLIGMKKTLVFYTGRAPKGKRTNWVMHEYRATEEELDGTKPGQSSFVLSRLFKKQDESIESLNCDEAEATVSSPTMVQSSPEVTQSDQPLIEA SPANTTSEVGAPVEFQSNNFGVCDGGGQSVGLGASEGDLPVEEALNWFIDSPPEPLDYKIFSPLHVQVQSAMGSSSMFYPGNNELSASNTGLQFNNGANE TDADTSDFVDSILQQPVEFSHGESSIQNISTIPHESLKSVVFVKDSGSYSGSDVDLATIRIQQEFQGADLLEGNVDQKPSSSLFSVSNAHQQQINLGLLQ NEPYEQKSLASISATDQFNNLNKGSSNTNQVGGSDIDWDGIRIRPRNPRRNQQFDRNLNMQGDASRRFLLQSKLQAHFSTKSGDLSSEEVESECIVTKDA KVTEMETPVCGGDNGIDEQHKSSLVEVSESLIDTKNNCSILSKVSSMFSKASCARNSFWPNTMFRVAVFAVLFAVVVSRWRHFILNTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49530	NAC	NTL6, ANAC062	NTM1 \(NAC WITH TRANSMEMBRANE ...		Potri.015G004100 [exp]	0	1
AT1G79260			unknown protein		Potri.010G175600 [exp]	3.87	0.7306
AT3G14250			RING/U-box superfamily protein...		Potri.001G037200 [exp]	6.32	0.7245
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Potri.010G043200 [exp]	6.78	0.7434
AT5G52990			SNARE-like superfamily protein...		Potri.012G016400 [exp]	9.27	0.7316
AT1G52720			unknown protein		Potri.001G174300 [exp]	19.26	0.6481
AT2G30000			PHF5-like protein (.1)		Potri.001G277800 [exp]	21.21	0.6941
AT4G31410			Protein of unknown function (D...		Potri.006G275400 [exp]	28.84	0.6295
AT5G58230		MSI1, MEE70, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.014G179700 [exp]	34.05	0.6538
AT4G27450			Aluminium induced protein with...		Potri.011G122100 [exp]	35.49	0.6292
AT4G38210		ATHEXPALPHA1.23...	EXPANSIN 20, expansin A20 (.1)		Potri.004G208300 [exp]	36.27	0.6942

Compare expression of checked genes

Potri.015G004100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.