Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02880 335 / 1e-115 mucin-related (.1) AT5G62270 102 / 1e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G021000 [exp] 198 / 4e-64 AT2G02880 161 / 6e-50 mucin-related (.1) Potri.007G133900 [exp] 104 / 2e-25 AT5G62270 365 / 3e-124 unknown protein Potri.017G017901 [exp] 49 / 2e-06 AT5G62270 241 / 7e-77 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012838 [exp] 354 / 1e-122 AT2G02880 346 / 4e-119 mucin-related (.1) Lus10030486 [exp] 353 / 2e-122 AT2G02880 347 / 7e-120 mucin-related (.1) Lus10034311 [exp] 122 / 6e-32 AT5G62270 447 / 3e-157 unknown protein Lus10035022 [exp] 121 / 8e-32 AT5G62270 425 / 6e-149 unknown protein Lus10021682 [exp] 119 / 5e-31 AT5G62270 425 / 7e-149 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G004400.2 pacid=42776460 polypeptide=Potri.015G004400.2.p locus=Potri.015G004400 ID=Potri.015G004400.2.v4.1 annot-version=v4.1 ATGCTTTCTGTTCGACAGATAGCAGCAGCAAGTTGTAGTAGAATTAAAGAAAGATGCAGAATAAATGGAGTGAGCCAATTTTTTCAATCATTTTCTACCA AAAAAGGGGAGGATGAATGGAATGATGCGTGGGAAACAGCGTGGCTACCAGAGGATCTAACGGCTAAGAACAGAGCTCCATGGGAAATGGACGTCAATTT CTCTTCACCCACAGGGATAGAGGACGCTGAGACCAAGGCTTTTGTTGAGGAAATGAATGATAACTGGGATGAGCGGCGGAAAACCCAGCCACAACCACAG CCAAAGAATGATAATAATAAAAATGGAGGTGATTCGCTTTATAATTTGGACAATATGAAAAAAGATTACAGATTGAAGAAGCAAAGAATTCATGCTGGGT TATGGACCAAGGAAATTGAGAAGCAGCAGGAGGAGGCTATGAATGCTACATTGGGAGATTCTTCTCCTGATGATATCGACAGATTGCTTGATAGCTGCTC TGAAATTTTTGACACAGCCAATAATGACCTGGACAACTCAAAAATCCCAAGCTCTTCCGAGTTTAAAAATAAACCTGATGGTTGGGAAACAACAGCGAAG GCACAAGATGGAAATATTTGGGAAATGTCACAGAGGGAGGAAGATATTCTCCTCCAAGAATTTGATCGTCGAATAGCATACAGCAAATTCCAGATAGCTA GTTTTATCAAGACTCACATATTTAGCCGGAGGAGGCCTATTGATGGTTGGAAATACATGATAGAAGAACTAGGACCAAATGCCAAGAAAGGGAAGGGTAG TGTTACAAGAGTGCCGAGCCTATCTGATCCATCAACACAACCATTCAAAGAGGACAGGAAACTAATTACCCACAAAGGGAGGTAG
AA sequence Show only first row Show all	>Potri.015G004400.2 pacid=42776460 polypeptide=Potri.015G004400.2.p locus=Potri.015G004400 ID=Potri.015G004400.2.v4.1 annot-version=v4.1 MLSVRQIAAASCSRIKERCRINGVSQFFQSFSTKKGEDEWNDAWETAWLPEDLTAKNRAPWEMDVNFSSPTGIEDAETKAFVEEMNDNWDERRKTQPQPQ PKNDNNKNGGDSLYNLDNMKKDYRLKKQRIHAGLWTKEIEKQQEEAMNATLGDSSPDDIDRLLDSCSEIFDTANNDLDNSKIPSSSEFKNKPDGWETTAK AQDGNIWEMSQREEDILLQEFDRRIAYSKFQIASFIKTHIFSRRRPIDGWKYMIEELGPNAKKGKGSVTRVPSLSDPSTQPFKEDRKLITHKGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02880			mucin-related (.1)		Potri.015G004400 [exp]	0	1
AT5G24650			Mitochondrial import inner mem...		Potri.012G004600 [exp]	3.87	0.7955
AT5G64830			programmed cell death 2 C-term...		Potri.007G080500 [exp]	4.24	0.7802
AT5G30495			Fcf2 pre-rRNA processing prote...		Potri.008G206400 [exp]	5.09	0.7918
AT3G61860		ATRSP31, At-RS3...	arginine/serine-rich splicing ...		Potri.002G175000 [exp]	29.69	0.7264	Pt-RSP31.2
AT2G39440			unknown protein		Potri.012G120100 [exp]	36.86	0.7653
AT2G47790			Transducin/WD40 repeat-like su...		Potri.002G205600 [exp]	46.98	0.7394
					Potri.018G024000 [exp]	66.27	0.6751
AT3G56680			Single-stranded nucleic acid b...		Potri.006G034700 [exp]	86.94	0.6782
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Potri.017G076000 [exp]	95.34	0.7245
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Potri.010G206900 [exp]	156.97	0.6986

Compare expression of checked genes

Potri.015G004400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.