Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55830 263 / 3e-78 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 255 / 5e-75 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 246 / 8e-72 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 246 / 1e-71 Concanavalin A-like lectin protein kinase family protein (.1) AT5G42120 229 / 1e-65 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60300 228 / 6e-65 LecRK-I.9 lectin receptor kinase I.9, Concanavalin A-like lectin protein kinase family protein (.1.2.3) AT5G06740 219 / 3e-62 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 219 / 3e-62 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 218 / 8e-62 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 217 / 2e-61 RLK receptor lectin kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G087800 [exp] 253 / 4e-74 AT3G53380 881 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G130000 [exp] 251 / 1e-73 AT3G53380 866 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.008G058400 [exp] 247 / 2e-72 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G193000 [exp] 244 / 2e-71 AT5G06740 688 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.010G200600 [exp] 243 / 1e-70 AT3G55550 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G045000 [exp] 242 / 1e-70 AT5G06740 702 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.005G189500 [exp] 235 / 5e-68 AT5G42120 671 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G368300 [exp] 229 / 8e-66 AT5G55830 853 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088600 [exp] 229 / 1e-65 AT2G37710 808 / 0.0 receptor lectin kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040276 [exp] 250 / 2e-73 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10019923 [exp] 250 / 1e-72 AT3G53380 927 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10010867 [exp] 247 / 4e-72 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10026493 [exp] 242 / 3e-70 AT3G53380 872 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10024365 [exp] 241 / 1e-69 AT3G55550 711 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10042795 [exp] 232 / 1e-66 AT5G42120 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029769 [exp] 232 / 1e-66 AT5G42120 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016620 [exp] 238 / 2e-66 AT5G55830 826 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10009423 [exp] 210 / 2e-58 AT5G06740 446 / 2e-147 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 209 / 3e-58 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.015G004500.1 pacid=42776354 polypeptide=Potri.015G004500.1.p locus=Potri.015G004500 ID=Potri.015G004500.1.v4.1 annot-version=v4.1 ATGGGTTCTTACTGCTGCTTCTCGTTGTTATTCTCAGCAACTATTGTAGTGTTTCTAGCACATCCAATTTTAGCTGACAGGAAGAAGCAGATAACTGGAC CTGCAGTTACAGTGACCAAACATCTTTTCTTCTCAGATTTTAGGCTAGATGATCCCAAAATTGTACATGAGGTTAAGCTTTTAGGTAGTGCCAGGTTTTC AGATGAAAAGGGAGCTATCCAAATTCCTGACGAATCCCAGTTAGATCTGAGACATCAAGCAGGACGAGCCATCCATGCTTATCCTATCCGTATGCTTGAT CCGCTCACTGGTACTCCAGCTTCCTTCGAGACCACCTTCTCTTTCCAATTTAGCAACTCTAGTGCTGAATCTCATGTCAACTCTACAGATGGTTACAATA ATAGTGGAGGCAGTGGCCTTGCCTTTATTGTGGTGCCTGATGAGTTCACTGTGGGTAGGCCGGGACCATGGCTGGCCATGCTCAATGATGCCTGTGAGGA CAATTATAAAGCTGTTGCTGTTGAGTTTGATACCCGTCATAACCCTGAATTTGGTGATCCAAATGACAATCATGTGGGAATCAATCTTGGCAGCATCATT TCCAGCACGACTGTAAATGCTTCAGATGTCGGTGTCTACCTCAAGGATGGTTTGATTCACCAAGCTAAGATAGCATATAATGGTTCACGAAGCTGGATGG AAGTTAGCCTTGGATCGAAGACCATCTTCTCTGGTTCTCTTGATCTCTCCCCTTTTCTCAATGAATACATGTTTGTTGGATTCTCAGCTTCAACTGGCAA TATGACCCAAATTCACAATGTATACTCGTGGAACTTCACTTCTACAAGCCAAGCCTCTCTCCGTGCCCCATCTGCAGAGACATGTGAGAGTAAGCTTATG GAGCAATATGATCAAGGTGTTCAAAGTTCAGCGTCACATAGCTCAAAGAAAGAACCCCCAAACAGTTTGTTGATTTTCATTTGTGTGATGGCACTGGCTA TAGCTGTGTTTGCCAGTCTTTTCTATAACGGCAGGCGCAGAAATAATCAAACTAAGGCTGTGATATTGCCAGATAAAAGGCAACGACCAAGGCCTCCCAA CAAACCCCGTCGCTTCACCATCTCTGAAGTCTCCTCTGCCACTCGGGGTTTTCACGAGTATGAAATACTAGGCAACGATTCCAAAGGTATTTACTACAGA GGGAAGCTTCCAAATGGTTGTCAAGTGGCCATTAAACGTTTCTCTGCTCAATTTTTGAGTTCACAAATTGGATTGGATAGACGAAGATTGCTCAAACAAA TCAGTACCATTAGCCGAGTTCGACACCCCAACTTGGTTCCTATCAGAGGTTGGTGTCAGGATAATCGTGAAACCATGGTTGTGTATGACTCTTATCCAAA TGGAAGCCTCGACAAATGGCTATTTGGGGCTGGCGTGCTTCCATGGACTCGGCGGTTGAAAGTAGTTAAAGATGTTGCAGATGCACTCAGTTTCCTCCAC TCAAAGCAGCTAGCTCACAAGAACATGAAAACTACCAGTGTCTTTCTTGATGTTAGCTTCAGAGCAGTTCTGGGCGACTTTGGCTTCGTGCTCTCTTCCA CCGAGTCGCAACGTTTCGAAGCAACCGTGAGTCAAAAGGCTGATGTGTTTGAATTCGGCATTTTTGTGTTGGAAGTTGTTTCTGGGAGAGGAAGGTTGGA GTCTGAGTTGAGGCAAGAAGAGAGGGATTTGTTGGATTTCGCATGGAGAATGCATGAGATTGATGAGAAGGCAAGATTGGTGGACAGGAGGATGGGCTCC ATGGTGAACTTGGAACAAGCAATTAGAGTGTCGGAGATTGGACTGCTTTGTACACTAAATGAGAACAAAGGCAGGCCATGCATGGAGGAGGCGGTGGAGT TTCTGAACCTGGATGGGCCGATTCCGGAGTTGCCACCAAATAGACCTGTTTCTCTTTTTCCCTACAGCAGCGCCAATACTGGTCTCTGCACTGGCTATTC CTGCACTCTTTTCAAGTGA
AA sequence Show only first row Show all	>Potri.015G004500.1 pacid=42776354 polypeptide=Potri.015G004500.1.p locus=Potri.015G004500 ID=Potri.015G004500.1.v4.1 annot-version=v4.1 MGSYCCFSLLFSATIVVFLAHPILADRKKQITGPAVTVTKHLFFSDFRLDDPKIVHEVKLLGSARFSDEKGAIQIPDESQLDLRHQAGRAIHAYPIRMLD PLTGTPASFETTFSFQFSNSSAESHVNSTDGYNNSGGSGLAFIVVPDEFTVGRPGPWLAMLNDACEDNYKAVAVEFDTRHNPEFGDPNDNHVGINLGSII SSTTVNASDVGVYLKDGLIHQAKIAYNGSRSWMEVSLGSKTIFSGSLDLSPFLNEYMFVGFSASTGNMTQIHNVYSWNFTSTSQASLRAPSAETCESKLM EQYDQGVQSSASHSSKKEPPNSLLIFICVMALAIAVFASLFYNGRRRNNQTKAVILPDKRQRPRPPNKPRRFTISEVSSATRGFHEYEILGNDSKGIYYR GKLPNGCQVAIKRFSAQFLSSQIGLDRRRLLKQISTISRVRHPNLVPIRGWCQDNRETMVVYDSYPNGSLDKWLFGAGVLPWTRRLKVVKDVADALSFLH SKQLAHKNMKTTSVFLDVSFRAVLGDFGFVLSSTESQRFEATVSQKADVFEFGIFVLEVVSGRGRLESELRQEERDLLDFAWRMHEIDEKARLVDRRMGS MVNLEQAIRVSEIGLLCTLNENKGRPCMEEAVEFLNLDGPIPELPPNRPVSLFPYSSANTGLCTGYSCTLFK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55830			Concanavalin A-like lectin pro...		Potri.015G004500 [exp]	0	1
AT5G42750		BKI1	BRI1 kinase inhibitor 1 (.1)		Potri.014G031100 [exp]	5.29	0.9500
AT1G52870			Peroxisomal membrane 22 kDa (M...		Potri.011G123700 [exp]	10.39	0.9516
AT5G61040			unknown protein		Potri.008G096100 [exp]	15.81	0.9468
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Potri.001G110200 [exp]	17.49	0.9501
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Potri.003G123600 [exp]	19.59	0.9463
AT1G55110	C2H2ZnF	ARABIDOPSISTHAL...	indeterminate(ID)-domain 7 (.1...		Potri.003G036900 [exp]	20.49	0.9351
					Potri.014G124700 [exp]	25.09	0.9257
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Potri.010G116500 [exp]	32.49	0.9413
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G057800 [exp]	34.29	0.9225
AT2G32480		ARASP	ARABIDOPSIS SERIN PROTEASE (.1...		Potri.014G154000 [exp]	34.81	0.9405

Compare expression of checked genes

Potri.015G004500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.