Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24500 67 / 2e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G021300 [exp] 406 / 4e-142 AT5G24500 81 / 6e-17 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015567 [exp] 105 / 3e-26 AT5G24500 94 / 6e-22 unknown protein Lus10032937 [exp] 47 / 3e-06 AT5G24500 47 / 9e-07 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G005100.1 pacid=42775330 polypeptide=Potri.015G005100.1.p locus=Potri.015G005100 ID=Potri.015G005100.1.v4.1 annot-version=v4.1 ATGCTGTGCTCAGTTAAAACCAGCAAGTCCGGTTCAAACTGGTTAGACCGGCTCTGGTCCAACAAGGGCTTCAGCAACAATGATGATGATGACCCTTCTG TTCCAAACCCATCTAGTTCTCCGATTACCGATGCTTCCAATTCTGTCATCAACTCAAACTCCGAGTCAACTCACTCTGAATCAGATCAAAACAAAGTCAC AACAACAACAACCAGGGAGATTTCTTCAAGTGACAATAAAGATTTGTTCTTTTTAATGAACAATGTTCTTTCAGACCTCTTTAACATGGGTGGTTGCAGT GACCCGATTGAGGGAAGTTCAAGACATTCCAGGAAAAAGGAGAGGATTCCTAGAAAACAAACGAAGCCCAAGTTTTGTTTTGTTTCTGGGAATAACAGTA GTAATGATTCTTTAGATTGCGTGAGAAAAGACGAGAATGTCCTTGTTGCTACAGGGTCATTGAATTCTGATAAAAATTCTAATAATGTGGATTGTGGGGT TGATGATGATGACGAGGAGGAGGAGGAGGAGGATGTTGAGGAGGAGAAGGGGAAGGCTTTTGGTGTTAGTGGTGATAAAGAGCTAAAAGGGTATTCAAGA AGTGAGGTGACCGTAATTGATACAAGTTGTCTAGTGTGGAAGTTTGATAAGTTGGTGTTTAGAAAGAAGAACGTGTGGAAAGTTAGGGATAAGAAGGGAA AATCTTGGGTGTCTGGGAGCAAGAAGAGGAAAGTAATTGACTTGGAATCTGCAAATGGAAATGGTGCTAAGAAGAAAGCTAAAGTTTCAAACTTGGAGGT TGGTTCGTCCAAGGATGCCAATGATGTTCAGAAACCAGAGGATGAGAGAAGGGAAGAGGTAGAAATGGCAGAGGATCATAGCCAAGTTGCCACAAAGAGG ATTCATTTATCCAGATCTCCAGACAAATCTAAAAAGAGTGGTTCATCTGTTATTTTTATAAAAGCCATCCCTACAAGCAACAAAAGTGGGAGAATTACCA AGAATCGTCTCAAGGACACTCAAAAGTAA
AA sequence Show only first row Show all	>Potri.015G005100.1 pacid=42775330 polypeptide=Potri.015G005100.1.p locus=Potri.015G005100 ID=Potri.015G005100.1.v4.1 annot-version=v4.1 MLCSVKTSKSGSNWLDRLWSNKGFSNNDDDDPSVPNPSSSPITDASNSVINSNSESTHSESDQNKVTTTTTREISSSDNKDLFFLMNNVLSDLFNMGGCS DPIEGSSRHSRKKERIPRKQTKPKFCFVSGNNSSNDSLDCVRKDENVLVATGSLNSDKNSNNVDCGVDDDDEEEEEEDVEEEKGKAFGVSGDKELKGYSR SEVTVIDTSCLVWKFDKLVFRKKNVWKVRDKKGKSWVSGSKKRKVIDLESANGNGAKKKAKVSNLEVGSSKDANDVQKPEDERREEVEMAEDHSQVATKR IHLSRSPDKSKKSGSSVIFIKAIPTSNKSGRITKNRLKDTQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24500			unknown protein		Potri.015G005100 [exp]	0	1
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.018G141500 [exp]	1.00	0.8644
AT5G35910			Polynucleotidyl transferase, r...		Potri.013G062800 [exp]	9.38	0.8044
AT2G43210			Ubiquitin-like superfamily pro...		Potri.017G036600 [exp]	11.40	0.7470
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Potri.011G065500 [exp]	12.32	0.7539
AT3G14360			alpha/beta-Hydrolases superfam...		Potri.003G073800 [exp]	12.64	0.7366
AT4G27190			NB-ARC domain-containing disea...		Potri.001G446966 [exp]	21.49	0.7644
AT3G61610			Galactose mutarotase-like supe...		Potri.001G095300 [exp]	21.93	0.7426
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Potri.003G128000 [exp]	22.44	0.7480	Pt-GL3.2
AT1G76320	FAR1_related	FRS4	FAR1-related sequence 4 (.1.2)		Potri.003G207100 [exp]	23.95	0.7618
AT5G15080			Protein kinase superfamily pro...		Potri.004G123800 [exp]	27.54	0.7452

Compare expression of checked genes

Potri.015G005100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.