Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54180 492 / 4e-171 PTAC15 plastid transcriptionally active 15 (.1) AT4G38160 81 / 1e-16 PDE191 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) AT4G14605 79 / 1e-15 Mitochondrial transcription termination factor family protein (.1) AT1G74120 76 / 1e-14 Mitochondrial transcription termination factor family protein (.1) AT1G62110 72 / 2e-13 Mitochondrial transcription termination factor family protein (.1) AT2G44020 72 / 3e-13 Mitochondrial transcription termination factor family protein (.1) AT1G62085 70 / 2e-12 Mitochondrial transcription termination factor family protein (.1) AT3G60400 66 / 3e-11 Mitochondrial transcription termination factor family protein (.1) AT2G36000 65 / 3e-11 EMB3114 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) AT2G21710 66 / 5e-11 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G067600 [exp] 89 / 2e-18 AT4G14605 571 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.004G209400 [exp] 80 / 3e-16 AT4G38160 481 / 3e-172 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.009G170300 [exp] 79 / 2e-15 AT4G38160 479 / 8e-170 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.013G116700 [exp] 77 / 1e-14 AT2G44020 764 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.016G072200 [exp] 76 / 1e-14 AT2G36000 280 / 1e-92 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.009G116200 [exp] 72 / 4e-13 AT2G21710 748 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Potri.001G034966 [exp] 71 / 7e-13 AT5G07900 201 / 1e-60 Mitochondrial transcription termination factor family protein (.1) Potri.001G029400 [exp] 69 / 2e-12 AT5G07900 181 / 4e-53 Mitochondrial transcription termination factor family protein (.1) Potri.011G081400 [exp] 68 / 3e-12 AT2G34620 392 / 5e-138 Mitochondrial transcription termination factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004614 [exp] 86 / 2e-17 AT2G44020 707 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10013854 [exp] 77 / 3e-15 AT4G38160 446 / 2e-158 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Lus10032061 [exp] 78 / 5e-15 AT4G14605 521 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10035227 [exp] 77 / 6e-15 AT4G14605 518 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10004534 [exp] 76 / 7e-15 AT2G44020 477 / 7e-168 Mitochondrial transcription termination factor family protein (.1) Lus10029422 [exp] 74 / 6e-14 AT2G36000 294 / 3e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10036450 [exp] 74 / 7e-14 AT5G07900 176 / 3e-51 Mitochondrial transcription termination factor family protein (.1) Lus10016971 [exp] 73 / 7e-14 AT2G36000 271 / 2e-89 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10040820 [exp] 73 / 1e-13 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10042322 [exp] 73 / 3e-13 AT2G21710 720 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [poplar] [flax] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Potri.015G005200.1 pacid=42775280 polypeptide=Potri.015G005200.1.p locus=Potri.015G005200 ID=Potri.015G005200.1.v4.1 annot-version=v4.1 ATGCTTGCAACAGCAAACCCTTTATTTTCTTCTTCAAATTCTTCCTTTCTCTTGCAAGCAACAAACCCATTACCAATAAAGCTTCAATCTTTAGCTGCTC CATTCACAACTTTCTCTCCCCATGGAAAGTTCACTCTAGCGAACTTTGCTAAAGCTTCAAGATTCTTAGCCCCTGTGGGTTTTCCACTCACTAAACACCT TCTAGTCCAGTGCAGCTGTCTGGAATTGCCTTCGATTTTGCAGAGTGAATTTGGTTTGATTTATTCGTTCTTTGCAGAAATGGGTTTCAATGAGAAAGAA ACTGGGTTACTGTTAGAGCAGAACCCAGCTCTAAAGTCTGCATCTTTTGACTCCATACGAGTCCATGTTTTACTCTTAGAGTCTGTTGGAATCAAAGGCG CTGAACTATATCACTTGATTGATAAGTCTCCGGATGTTTTAACAGCGAAGGAAATTGTTCCATTGATACATTTTGTGCTTAATGATTTAGAAGGAAAGGT CGAGCCAGCACAACTTAGGCGCCTTTTGATTGCCACTGTGCCAAGGTTCTTGGCTGGTTTTGATGAAAAGGTTAAGCTGTTGATTAAACGTGGAATTCCT CAAGAAAAGATTGTTCATGTTCTCAACAACGTGAATTTGACCAAGGCTTTGAGCCTTAAGTCTATTGAAGAAATTGAGAAGACTGTTACTTACTTGAGTC GTTTTGGTGGGGTTGACTTAATCGTTAGGCGGCCAATGATACTCAATTTTGATTTGGATACTCAGTTGATTCCTAGAGTAGAGTTGCTCAAGGAGATTAG TGGTGGAGATGAGGATGCCACGGGGATTGTGTTGCATAAACTCCCTGCCATTTTAAGTTACAGTGTGAAGCATACGGGGGGGCATGTTGAGTTGTTGAGA TCTTTTGCGGGCCTAACTGATCCACAAATATTCAAGATTTTTTCTGTGTTTCCAAATGTGGTTAGTGCCAGCAAGGAGAGGAAGTTGCGTCCGAGAATAG AGTTTCTCAAGCAATGCGGGTTGAGTTCTGACGAGATATTCAAGTTCTTGACTAAAGCCCCTGTATTTCTTGGCCTGTCCTTTGAAGATAACCTCGTGCA TAAACTTGTTGTTTTGGTGAAGATAGGGTATGAAAATGAAACCAAGGAATTGGCTGCGGCAATGGGAGCTGCATCAAGGACAAGCTGTGAGAATTTGCAA AATGTGATTGGGCTATTCTTGAGCTATGGTCTTACTTATGCAGATATTCTTGCCATGAGCAAGAAGCACCCTCAGATTCTACAGTACAAATGTGGTGCTT TGGAGGAGAAGTTGGAATTCTTGATTGAGGAAATGGGTCGTGGAGTCAGAGAGCTTTTGTCTTTTCCTGCATTTCTTGGTTACAACCTTGATGAGAGGAT TAAGCATAGGTATGAAGTAAAGAAGTTGACTACAGGGGAAGGGATGTCCATCAATAAGCTCTTGAGTGTCTCAGATGATAGATTTCTAAATCAGAAGCAA AAGAAAAAACCTATTCCCGAAGGACAGTCTGAACGAATGATGAAGGTTGGATGA
AA sequence Show only first row Show all	>Potri.015G005200.1 pacid=42775280 polypeptide=Potri.015G005200.1.p locus=Potri.015G005200 ID=Potri.015G005200.1.v4.1 annot-version=v4.1 MLATANPLFSSSNSSFLLQATNPLPIKLQSLAAPFTTFSPHGKFTLANFAKASRFLAPVGFPLTKHLLVQCSCLELPSILQSEFGLIYSFFAEMGFNEKE TGLLLEQNPALKSASFDSIRVHVLLLESVGIKGAELYHLIDKSPDVLTAKEIVPLIHFVLNDLEGKVEPAQLRRLLIATVPRFLAGFDEKVKLLIKRGIP QEKIVHVLNNVNLTKALSLKSIEEIEKTVTYLSRFGGVDLIVRRPMILNFDLDTQLIPRVELLKEISGGDEDATGIVLHKLPAILSYSVKHTGGHVELLR SFAGLTDPQIFKIFSVFPNVVSASKERKLRPRIEFLKQCGLSSDEIFKFLTKAPVFLGLSFEDNLVHKLVVLVKIGYENETKELAAAMGAASRTSCENLQ NVIGLFLSYGLTYADILAMSKKHPQILQYKCGALEEKLEFLIEEMGRGVRELLSFPAFLGYNLDERIKHRYEVKKLTTGEGMSINKLLSVSDDRFLNQKQ KKKPIPEGQSERMMKVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54180		PTAC15	plastid transcriptionally acti...		Potri.015G005200 [exp]	0	1
AT5G50915	bHLH	bHLH137	basic helix-loop-helix (bHLH) ...		Potri.015G104200 [exp]	5.00	0.8795
AT5G02710			unknown protein		Potri.006G215300 [exp]	5.09	0.9149
AT5G26110			Protein kinase superfamily pro...		Potri.002G049900 [exp]	5.19	0.8889
AT5G59600			Tetratricopeptide repeat (TPR)...		Potri.001G243800 [exp]	6.63	0.8911
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Potri.010G206900 [exp]	7.28	0.8323
AT4G34412			unknown protein		Potri.004G141400 [exp]	14.83	0.8823
AT4G10070			KH domain-containing protein (...		Potri.019G072500 [exp]	16.97	0.8443
AT3G58830			haloacid dehalogenase (HAD) su...		Potri.005G201100 [exp]	18.11	0.8016
AT1G73090			unknown protein		Potri.010G250100 [exp]	18.65	0.8723
AT4G26810			SWIB/MDM2 domain superfamily p...		Potri.015G137600 [exp]	22.64	0.7999

Compare expression of checked genes

Potri.015G005200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.