Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32790 416 / 3e-145 CID11 CTC-interacting domain 11 (.1.2) AT3G49390 411 / 2e-143 CID10 CTC-interacting domain 10 (.1.2) AT4G10610 399 / 7e-139 ATRBP37, RBP37, CID12 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) AT3G14450 361 / 3e-124 CID9 CTC-interacting domain 9 (.1) AT1G53650 352 / 9e-121 CID8 CTC-interacting domain 8 (.1.2) AT5G24440 319 / 6e-108 CID13 CTC-interacting domain 13 (.1) AT1G22760 60 / 1e-09 PAB3 poly(A) binding protein 3 (.1) AT2G36660 59 / 2e-09 PAB7 poly(A) binding protein 7 (.1) AT4G34110 58 / 6e-09 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT2G23350 56 / 4e-08 PABP4, PAB4 poly(A) binding protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G022000 [exp] 653 / 0 AT1G32790 428 / 4e-150 CTC-interacting domain 11 (.1.2) Potri.011G152700 [exp] 390 / 5e-135 AT4G10610 401 / 5e-140 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) Potri.001G377500 [exp] 367 / 1e-126 AT3G14450 424 / 2e-150 CTC-interacting domain 9 (.1) Potri.011G095800 [exp] 360 / 3e-124 AT3G14450 391 / 3e-137 CTC-interacting domain 9 (.1) Potri.001G448800 [exp] 335 / 5e-114 AT1G32790 363 / 2e-125 CTC-interacting domain 11 (.1.2) Potri.010G209701 [exp] 64 / 5e-11 AT3G55340 265 / 2e-82 phragmoplastin interacting protein 1 (.1) Potri.001G304000 [exp] 64 / 6e-11 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.004G177000 [exp] 64 / 9e-11 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.002G124200 [exp] 62 / 4e-10 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008851 [exp] 498 / 2e-177 AT3G49390 427 / 7e-150 CTC-interacting domain 10 (.1.2) Lus10032942 [exp] 479 / 7e-170 AT3G49390 421 / 2e-147 CTC-interacting domain 10 (.1.2) Lus10032941 [exp] 425 / 6e-149 AT1G32790 383 / 4e-133 CTC-interacting domain 11 (.1.2) Lus10033242 [exp] 397 / 7e-138 AT1G32790 436 / 1e-153 CTC-interacting domain 11 (.1.2) Lus10008275 [exp] 400 / 1e-137 AT1G32790 437 / 8e-153 CTC-interacting domain 11 (.1.2) Lus10002835 [exp] 66 / 3e-11 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 65 / 3e-11 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010042 [exp] 63 / 2e-10 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010370 [exp] 62 / 3e-10 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10034466 [exp] 61 / 6e-10 AT2G16940 569 / 0.0 Splicing factor, CC1-like (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] PF07145 [poplar] [flax] PAM2 Ataxin-2 C-terminal region
Representative CDS sequence Show only first row Show all	>Potri.015G005400.4 pacid=42776091 polypeptide=Potri.015G005400.4.p locus=Potri.015G005400 ID=Potri.015G005400.4.v4.1 annot-version=v4.1 ATGGCTGTTGCTGAGAATGCTGGAGTTAGGAATGGAACCGCTGGTCAAAACTTTGACAACACTGTAGTGTCGTCAGAGACCAATGATCTTGAGAGAACAT CATCAAAACCCAGAAACGAATCAGTGGGTTTCAGTAATACTAAAGACTCAAACTTTCAAAGCCAAAACAATGATCATCAGAGTGTTAACGGCAAGTCTGG TGAGACTGGGGGTTTAAGCAATGGAAAGACTAATGGGGCCCAGATGCAAAATGGGTTTGATATGAATCAGTCTGGTGGCTATGGGGATGATCAGATTCGT CATCAAAAGTCTAAATCTAATGAGGTGAATGATATGAATGATTTGGTGGAGATGCTGTCAAAGCTGAATCCTATGGCCGAAGAGTTTGTGCCTCCTTCAC TCGCTAATCATCATGGATACTTTGGTAACGGGTTTGGCATTAATGCTAACAATTTTGTAGTGCAAACCATTAACGGGAATGCCAATGGACCTATTAATAG AAGGAAGAAGAACTTTAATCAAGGGAGGCGAAGGATGAACAGCAGGACAAGTATGGCTCAGCAAGAGGAGATAATCAGGAAGACTGTATATGTTTCTGAC ATTGATCAACAGGTTACTGAAGAGCAGCTTGCGGGGCTCTTTATTCACTGTGGACAGGTTGTTGACTGTCGTATATGTGGTGACCCTAACTCTGTTCTTC GTTTTGCCTTTGTTGAGTTTACTGATGAAGAGGATGCCAGGACTGCATTAAGTTTGTCAGGGACAGTTCTTGGATATTACCCACTAAGAGTGCTGCCTTC AAAAACTGCTATTGCACCTGTTAACCCAACATTTTTGCCAAGGTCTGAAGACGAGCGTGAGATATGTGCAAGGACTATTTATTGTACAAATATTGACAAA AAGATCACCCAGGCAGATGTCAAGCTCTTCTTTGAATCCTTTTGCGGAGAGGTTCATCGCTTGAGGCTCCTTGGAGATTATCATCATTCAACCCGCATTG CTTTCGTTGAGTTTGCAGTGGCTGAGGGTGCAATTGCAGCACTGAACTGCAGTGGTGCGGTTCTGGGATCACTGCCAATAAGGGTGAGCCCATCGAAAAC ACCTGTTCGCCCTCGCATCCCTCGCCCACTGTTCAACTGA
AA sequence Show only first row Show all	>Potri.015G005400.4 pacid=42776091 polypeptide=Potri.015G005400.4.p locus=Potri.015G005400 ID=Potri.015G005400.4.v4.1 annot-version=v4.1 MAVAENAGVRNGTAGQNFDNTVVSSETNDLERTSSKPRNESVGFSNTKDSNFQSQNNDHQSVNGKSGETGGLSNGKTNGAQMQNGFDMNQSGGYGDDQIR HQKSKSNEVNDMNDLVEMLSKLNPMAEEFVPPSLANHHGYFGNGFGINANNFVVQTINGNANGPINRRKKNFNQGRRRMNSRTSMAQQEEIIRKTVYVSD IDQQVTEEQLAGLFIHCGQVVDCRICGDPNSVLRFAFVEFTDEEDARTALSLSGTVLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREICARTIYCTNIDK KITQADVKLFFESFCGEVHRLRLLGDYHHSTRIAFVEFAVAEGAIAALNCSGAVLGSLPIRVSPSKTPVRPRIPRPLFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32790		CID11	CTC-interacting domain 11 (.1....		Potri.015G005400 [exp]	0	1
AT3G09735			S1FA-like DNA-binding protein ...		Potri.016G087400 [exp]	3.87	0.6678	Pt-S1FA3.2
AT5G11730			Core-2/I-branching beta-1,6-N-...		Potri.006G233400 [exp]	4.89	0.6442
					Potri.003G011000 [exp]	10.24	0.6406
AT5G35080			unknown protein		Potri.006G061600 [exp]	13.26	0.6316
AT5G18120		ATAPRL7	APR-like 7 (.1)		Potri.019G035700 [exp]	14.96	0.6153
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Potri.001G060800 [exp]	20.17	0.6072
AT4G16695			unknown protein		Potri.003G078100 [exp]	22.97	0.5772
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Potri.006G113900 [exp]	27.49	0.5786
AT4G25225			unknown protein		Potri.001G124100 [exp]	29.93	0.5835
					Potri.003G010800 [exp]	33.24	0.6200

Compare expression of checked genes

Potri.015G005400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.