Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03890 49 / 1e-07 unknown protein AT3G10120 44 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G022300 [exp] 242 / 4e-83 AT5G03890 62 / 3e-12 unknown protein Potri.006G213100 [exp] 64 / 4e-13 AT3G10120 122 / 9e-36 unknown protein Potri.016G079700 [exp] 62 / 2e-12 AT3G10120 114 / 1e-32 unknown protein Potri.002G178900 [exp] 44 / 2e-05 AT3G61920 142 / 6e-43 unknown protein Potri.006G018200 [exp] 40 / 0.0003 ND / Potri.001G448500 [exp] 39 / 0.0005 AT1G64700 154 / 3e-47 unknown protein Potri.006G076500 [exp] 38 / 0.001 AT2G30230 42 / 7e-05 unknown protein
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14009 [poplar] [flax] DUF4228 Domain of unknown function (DUF4228)
Representative CDS sequence Show only first row Show all	>Potri.015G005700.1 pacid=42775189 polypeptide=Potri.015G005700.1.p locus=Potri.015G005700 ID=Potri.015G005700.1.v4.1 annot-version=v4.1 ATGGTTATATTTTCTTGGAGAAAAATGGGCAATTGCTTAGCTCATAATTGTGTTAGACCTCCCTTTATAGGTTCTTGCATCGGATTCCCTCAAGCGAAGC ATGAGAAAGTTTTGCATGTTGTCAAAACAGATGGAAAGGTTTTGGAATTCAGCGCTCCAATTCTTGTGAAAGATATCGCGGTCAACTTTCCTGGCTCAGG TATTGGTCTAACAAATGAAGCTATAGAGCATCTGCCACCAAGTTACGAGTTAAAGCTTGGAAATGTTTACCATGTTCTTCCACCACCTCCAGGGACTTCA CCGGTGGTTGACAGGGAAGAAGAAGCAAGTAGTGGTGGTGTCAAGAGGATTAAAGTTGTAATAACAAAGCAACAACTTCAGCAGCTTTTGAAAAAGGAAA TATCTCTTGAGGAGGTTCTGTTAGGGCTAGAGCAGAAAAGTTCTTCTCTTGACTCTCCAAGAAATTGGAAGCCAAAGCTGGAATCAATCCCTGAAGGACT TGAGTAG
AA sequence Show only first row Show all	>Potri.015G005700.1 pacid=42775189 polypeptide=Potri.015G005700.1.p locus=Potri.015G005700 ID=Potri.015G005700.1.v4.1 annot-version=v4.1 MVIFSWRKMGNCLAHNCVRPPFIGSCIGFPQAKHEKVLHVVKTDGKVLEFSAPILVKDIAVNFPGSGIGLTNEAIEHLPPSYELKLGNVYHVLPPPPGTS PVVDREEEASSGGVKRIKVVITKQQLQQLLKKEISLEEVLLGLEQKSSSLDSPRNWKPKLESIPEGLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03890			unknown protein		Potri.015G005700 [exp]	0	1
					Potri.017G080801 [exp]	3.16	0.9458
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Potri.003G108500 [exp]	13.49	0.8404	Pt-TIP5.1
AT4G16265		NRPE9B, NRPD9B,...	RNA polymerases M/15 Kd subuni...		Potri.010G142500 [exp]	14.96	0.9477
AT3G29770		ATMES11	ARABIDOPSIS THALIANA METHYL ES...		Potri.017G096900 [exp]	17.02	0.8739
AT4G27670		HSP21	heat shock protein 21 (.1)		Potri.015G005801 [exp]	18.57	0.9476
AT3G10040	Trihelix		sequence-specific DNA binding ...		Potri.016G096300 [exp]	19.13	0.8921
AT2G38480			Uncharacterised protein family...		Potri.016G128200 [exp]	24.18	0.8318
AT1G16840			unknown protein		Potri.008G005900 [exp]	24.61	0.8248
AT2G33710	AP2_ERF		Integrase-type DNA-binding sup...		Potri.005G087200 [exp]	25.45	0.8103
					Potri.014G065951 [exp]	26.26	0.9468

Compare expression of checked genes

Potri.015G005700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.