Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00820 277 / 7e-87 IQD17 IQ-domain 17 (.1) AT1G01110 256 / 7e-79 IQD18 IQ-domain 18 (.1.2) AT4G10640 170 / 2e-47 IQD16 IQ-domain 16 (.1) AT3G59690 94 / 3e-20 IQD13 IQ-domain 13 (.1) AT2G43680 91 / 5e-19 IQD14 IQ-domain 14 (.1.2.3) AT3G49260 83 / 8e-17 IQD21 IQ-domain 21 (.1.2.3) AT3G52290 83 / 8e-17 IQD3 IQ-domain 3 (.1) AT3G49380 82 / 9e-17 IQD15 IQ-domain 15 (.1) AT1G72670 82 / 2e-16 IQD8 IQ-domain 8 (.1) AT2G26180 80 / 8e-16 IQD6 IQ-domain 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G022500 [exp] 670 / 0 AT1G01110 242 / 2e-73 IQ-domain 18 (.1.2) Potri.002G178500 [exp] 370 / 1e-122 AT4G00820 458 / 1e-156 IQ-domain 17 (.1) Potri.014G104600 [exp] 352 / 1e-115 AT4G00820 432 / 2e-146 IQ-domain 17 (.1) Potri.011G153400 [exp] 350 / 7e-115 AT4G00820 331 / 3e-107 IQ-domain 17 (.1) Potri.001G448100 [exp] 347 / 9e-114 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.010G218100 [exp] 99 / 4e-22 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.006G226600 [exp] 95 / 1e-20 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.019G095700 [exp] 94 / 5e-20 AT3G59690 433 / 2e-147 IQ-domain 13 (.1) Potri.013G127200 [exp] 92 / 2e-19 AT3G59690 447 / 5e-153 IQ-domain 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008269 [exp] 249 / 4e-76 AT1G01110 317 / 8e-102 IQ-domain 18 (.1.2) Lus10010104 [exp] 224 / 3e-66 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2) Lus10012608 [exp] 218 / 7e-64 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10033237 [exp] 182 / 1e-52 AT1G01110 183 / 8e-55 IQ-domain 18 (.1.2) Lus10027059 [exp] 96 / 1e-20 AT3G59690 496 / 1e-171 IQ-domain 13 (.1) Lus10025593 [exp] 94 / 6e-20 AT3G59690 498 / 1e-172 IQ-domain 13 (.1) Lus10023233 [exp] 84 / 2e-17 AT4G00820 126 / 1e-33 IQ-domain 17 (.1) Lus10036508 [exp] 82 / 3e-16 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10004107 [exp] 80 / 1e-15 AT3G22190 308 / 6e-101 IQ-domain 5 (.1.2) Lus10041419 [exp] 79 / 2e-15 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF13178 [poplar] [flax] DUF4005 Protein of unknown function (DUF4005)
Representative CDS sequence Show only first row Show all	>Potri.015G005900.1 pacid=42776261 polypeptide=Potri.015G005900.1.p locus=Potri.015G005900 ID=Potri.015G005900.1.v4.1 annot-version=v4.1 ATGGTGAAGATTGGAGGAAGTTCTTGGCTGAACGCAGTCAAAAGGGCTTTCAGGTCTCCTAGTAAAGAGAATGATAAGAAAAGTAGTAGAAGGAGAGAAG TTTATGAACAAGAGGAGGAAGAAAAGAAGAGAGGGAAAAGAAGATGGATTTTCAGGAAGTCATCGAATCAAGAAACAGTAATACACCATTGTGGAGTGAC CACCATCACTAACATTACAGCAACCACCAATCCTGCTTCTGCTGCTAGTAATAGTATTGGTACTGAAGCTGCTGGTGCTAAGCAAAGACAAGCCCTTGAA GCGGCCATGGCCACAACAGCAGCGGCACAAGCAGCAGTTGCTACAGCTCAAGCAGCTGTTGAGGTTGTTAGACTCACCAGGCCTCCCCTTCTTGCTAAAC AACATTTTGCTGCCATTGCTATACAAAAAGCTTTTAGAGGATATCTGGCAAGGAGAGCTCTTAGAGCGCTAAAGGGGCTGGTAAAGATGCAAGCCTTAGT GAGAGGCCATAATGTTAGAAAGAGAGCAAATATGATTCTTCAGTGCATGCAAGCTATGGTGAGGGTGCAATCTCGGGTGCTTGATTCCTATGAAGGCAGC ACAAACTCCATCTCCAGTGATCAGAATAGCTTGTGGGGTTCAAATCTTGCCGAGAGGAAATCTACTTGTAGGGATGCAAGCAGCACTGCTGATGACTGGG TTCATTGCAATAATTACAAGCCTAAAACATTAGAGGAAATACAGGAAACAAAGGAAGTAGTCGCCTTGAAACGTGAAAAGGCCCTTGCTTATGCTTTCTC TCAACAGATATGGAAACCTGGAAGAGACTCATATGCAAGTGAAGGAGAGGTAGAAGAGAATCCCAGATGGCTAGACACGTGGAGAACCAGGAAGGAATGG GAGAGAAGAGGGAGCGGTGCATTGTGTGATCAATTATATCCCAGTAGAGACCCTGTCAAAAGTACTGTTGAAAGGGACACCTCTAGACCTTACTCCTACT CTACCCCAAATGCTCATAAATTCAATCATCAATATCACTACCAACAGCACAGGCCTAGTTCATATTCAGTTGCCTCTCCTCTTCAAAAAAACCACAACAC TCTCTCACAACCAGTCACACCATCCCTTTCCAAAACAAGAGCACTACTCCAAGTCCATTCAGCTAGCCCTCGCTGCCTAGGAGAAGGCAGAAACCATGTG ATGGAAGCAACCAATCCTTCTTCTGCTTCAATGCCTAACTACATGGCTGCCACTGCATCTGCCAAGGCTAGAATTCGATCACAAAGTGCACCAAGGCAGA GAGCTTCAACCCCAGAAAGAGAAAAGTCAGGTTCAGCCAGAAAACGCCTGTCTTTCCCAGTACCTGACCTGGCAACTAGCAATGGGGGTAACATGGTTAA CGATTATAGCCTGAGGAGTCCAAGTTTGAAGGGCATTCATGGAGCTAATATGGTAATGGAGCGAAGGTCTAACATGTCTTCTTGTTACACAGACAGCATC GATGATGAGGTATATCCTCCTTCAACTAATGACCTTATCAGGTGGTTAAGGTAA
AA sequence Show only first row Show all	>Potri.015G005900.1 pacid=42776261 polypeptide=Potri.015G005900.1.p locus=Potri.015G005900 ID=Potri.015G005900.1.v4.1 annot-version=v4.1 MVKIGGSSWLNAVKRAFRSPSKENDKKSSRRREVYEQEEEEKKRGKRRWIFRKSSNQETVIHHCGVTTITNITATTNPASAASNSIGTEAAGAKQRQALE AAMATTAAAQAAVATAQAAVEVVRLTRPPLLAKQHFAAIAIQKAFRGYLARRALRALKGLVKMQALVRGHNVRKRANMILQCMQAMVRVQSRVLDSYEGS TNSISSDQNSLWGSNLAERKSTCRDASSTADDWVHCNNYKPKTLEEIQETKEVVALKREKALAYAFSQQIWKPGRDSYASEGEVEENPRWLDTWRTRKEW ERRGSGALCDQLYPSRDPVKSTVERDTSRPYSYSTPNAHKFNHQYHYQQHRPSSYSVASPLQKNHNTLSQPVTPSLSKTRALLQVHSASPRCLGEGRNHV MEATNPSSASMPNYMAATASAKARIRSQSAPRQRASTPEREKSGSARKRLSFPVPDLATSNGGNMVNDYSLRSPSLKGIHGANMVMERRSNMSSCYTDSI DDEVYPPSTNDLIRWLR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00820		IQD17	IQ-domain 17 (.1)		Potri.015G005900 [exp]	0	1
AT2G23060			Acyl-CoA N-acyltransferases (N...		Potri.010G144700 [exp]	2.23	0.9693
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Potri.011G025000 [exp]	3.16	0.9679	Pt-ATML1.1
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.002G115100 [exp]	5.09	0.9337
AT1G48600		AtPMEAMT	phosphoethanolamine N-methyltr...		Potri.015G039000 [exp]	6.00	0.9346
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Potri.002G005800 [exp]	6.32	0.9378
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Potri.019G042300 [exp]	7.21	0.8784
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Potri.012G117500 [exp]	7.74	0.9446
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227400 [exp]	7.74	0.9468
AT5G20635		AGG3	Arabidopsis G protein gamma su...		Potri.006G141100 [exp]	8.36	0.9418
AT2G30370		EPFL6, CHAL	EPF1-like 6, CHALLAH, allergen...		Potri.013G155500 [exp]	8.48	0.9417

Compare expression of checked genes

Potri.015G005900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.