Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CYP89A22,Pt-ACT11.12
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64940 485 / 5e-168 CYP89A6 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) AT1G64950 483 / 3e-167 CYP89A5 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) AT2G12190 483 / 4e-167 CYP89A4 Cytochrome P450 superfamily protein (.1) AT1G64930 446 / 1e-152 CYP89A7 "cytochrome P450, family 87, subfamily A, polypeptide 7", cytochrome P450, family 87, subfamily A, polypeptide 7 (.1) AT1G64900 435 / 1e-148 CYP89A2 "cytochrome P450, family 89, subfamily A, polypeptide 2", cytochrome P450, family 89, subfamily A, polypeptide 2 (.1) AT3G03470 427 / 3e-145 CYP89A9 "cytochrome P450, family 87, subfamily A, polypeptide 9", cytochrome P450, family 87, subfamily A, polypeptide 9 (.1) AT5G61320 400 / 6e-135 CYP89A3 "cytochrome P450, family 89, subfamily A, polypeptide 3", cytochrome P450, family 89, subfamily A, polypeptide 3 (.1) AT5G04630 271 / 6e-85 CYP77A9 "cytochrome P450, family 77, subfamily A, polypeptide 9", cytochrome P450, family 77, subfamily A, polypeptide 9 (.1) AT3G10560 270 / 4e-84 CYP77A7, UNE9 UNFERTILIZED EMBRYO SAC 9, CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 7, Cytochrome P450 superfamily protein (.1) AT3G10570 265 / 3e-82 CYP77A6 "cytochrome P450, family 77, subfamily A, polypeptide 6", cytochrome P450, family 77, subfamily A, polypeptide 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G099100 [exp] 771 / 0 AT1G64940 540 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.001G330501 [exp] 752 / 0 AT1G64940 569 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.005G079600 [exp] 592 / 0 AT1G64940 575 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.007G087950 [exp] 589 / 0 AT1G64950 642 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088154 [exp] 588 / 0 AT1G64950 639 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088086 [exp] 583 / 0 AT1G64950 636 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088018 [exp] 580 / 0 AT1G64940 605 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.013G076700 [exp] 561 / 0 AT1G64940 592 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.013G076600 [exp] 557 / 0 AT1G64940 578 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010229 [exp] 486 / 3e-168 AT1G64940 574 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020353 [exp] 482 / 1e-166 AT1G64940 572 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10028654 [exp] 471 / 2e-162 AT1G64940 562 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10002138 [exp] 467 / 1e-160 AT1G64940 586 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020360 [exp] 463 / 3e-159 AT1G64940 613 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020359 [exp] 442 / 4e-151 AT1G64940 550 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10013067 [exp] 401 / 3e-135 AT1G64940 472 / 4e-163 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10034156 [exp] 289 / 2e-91 AT5G04660 679 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) Lus10009536 [exp] 268 / 2e-86 AT1G64940 290 / 1e-95 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10018351 [exp] 262 / 1e-80 AT1G11600 662 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.015G006100.1 pacid=42775767 polypeptide=Potri.015G006100.1.p locus=Potri.015G006100 ID=Potri.015G006100.1.v4.1 annot-version=v4.1 ATGGATCATTGGTTCCTCATCCTCATTTCTATCTCCCTCTCCATCTCCATCCCCGGCCTCCTCAAATTCATTCTCAACAGATACTTCATCAGCAAGAAGC CCGCTCACCACAAACTCCCTCCAAGCCCCCAATCGATTCCAGTGATTAGCAACTTCCTATGGCTCGGCCGCATATCTCCCTCTAATATCCACTCCATCCT CAACCCACTACATGCCAAGCTTGGCCCAATCCTAACTATCTACTTCGGCTTTCGCCCTGTCATCTTTATAGCTGACCGCTTCCTCGCTCACAAGGCCTTG ATCCAAAAGGGTGCCCTCTTTGCTAGCCGTCCACCAGCTTCTGAGACTCAAAGATTTCGCGGCAGCAATCGGCGACTTGTTAGTCTTTCTTTCTATGGCC CGACTTGGCGTCTCCTGCGGCAAAACCTTACCAAAAACGTTCTCCATCCTTCCTGCGCGAAATATTCCGCTCATTCCCGCCGTTGGGCGCTACAAATCCT TAAGAATCGTCTGGAATCCCAAGCAAAATCTGGTCAGCCTGTTTGTTTGAGGGAGCACTTTCTATATGCCATCTTTTGCCTGTTAGGCGTAATATGTTTT GGTGACAAGGTTGATGAAGACCAGATTAAACAAATCCAGGAAGTAGTGCATCGAGCGTTTTTGAGTTCTCGGAGGTTCGATACGCTCAATTTATGGCCAA GAGTGACCAAGATCGTGTTGCGTAGACGCTGGGAGGAATTATTACAGCTACGTCAAAGCGTACAAGATGTAACAATTCCCTTAATAAGAGCTAGAAAGAA GTTGCAAGAGGAAGAGAGGACAGGCATGGACACTCACCATGATCATGTTGTACCTTATGTTGATACATTATTAGCTCTGGAATTTCCCGATGATAAAAGA AAACTCGACGAGGAGGAAATTTCTAATTTATGCGGCGAATTTCTAAATGCGGGCACTGATACTACCACAACTGCCTTGGAATGGATCATGGCAAATCTGG TTAAATACCCAAAAATTCAAGAAAAGTTATTCATGGAGATTAAAGGGGTTGTTGGAGATGGAGATGTGAAGGAGGTCAACGAATCTGATTTGAAAAAGAT GTCGTATTTGAAAGCAGTGATTTTGGAAGGCCTGAGGCGGCATTCTCCTGCACGTTTTCTGATTCCACATGCGGTGACGGAAGATTTTGTTTTGAATAAT GAATATTTGATACCAAAGAATGCAGCCATAAATTTCCTGGTTGCCGAGATGGGGTGGGATCCAAAGGTGTGGGAAGATCCCATGGCATTCAAGCCGGAAA GGTTTCTGAATCATGAGAACGGAATTACGAAAGAATTTGATATCACAGGGAGTAGGGAGATTAAAATGATGCCATTTGGTGCAGGGAGGAGAATTTGTCC CGGTTACCAATTATCCATGCTTCTTCTGGAATTTTATGTGGCTAATTTAGTTTGGAAATATGAGTGGAAGGCTGTTGACGGAAATGATGTTGATTTGTCC GAGAAGATAGAGCATATAATGGCGATGAGAAATCCATTGCAGGTCCACTTATCCCCAAGGTAG
AA sequence Show only first row Show all	>Potri.015G006100.1 pacid=42775767 polypeptide=Potri.015G006100.1.p locus=Potri.015G006100 ID=Potri.015G006100.1.v4.1 annot-version=v4.1 MDHWFLILISISLSISIPGLLKFILNRYFISKKPAHHKLPPSPQSIPVISNFLWLGRISPSNIHSILNPLHAKLGPILTIYFGFRPVIFIADRFLAHKAL IQKGALFASRPPASETQRFRGSNRRLVSLSFYGPTWRLLRQNLTKNVLHPSCAKYSAHSRRWALQILKNRLESQAKSGQPVCLREHFLYAIFCLLGVICF GDKVDEDQIKQIQEVVHRAFLSSRRFDTLNLWPRVTKIVLRRRWEELLQLRQSVQDVTIPLIRARKKLQEEERTGMDTHHDHVVPYVDTLLALEFPDDKR KLDEEEISNLCGEFLNAGTDTTTTALEWIMANLVKYPKIQEKLFMEIKGVVGDGDVKEVNESDLKKMSYLKAVILEGLRRHSPARFLIPHAVTEDFVLNN EYLIPKNAAINFLVAEMGWDPKVWEDPMAFKPERFLNHENGITKEFDITGSREIKMMPFGAGRRICPGYQLSMLLLEFYVANLVWKYEWKAVDGNDVDLS EKIEHIMAMRNPLQVHLSPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.015G006100 [exp]	0	1	CYP89A22,Pt-ACT11.12
AT2G37920		EMB1513	embryo defective 1513, copper ...		Potri.006G092100 [exp]	5.00	0.9559
AT1G69200		FLN2	fructokinase-like 2 (.1)		Potri.008G097300 [exp]	18.05	0.9369
AT1G76730			NagB/RpiA/CoA transferase-like...		Potri.005G194800 [exp]	19.79	0.9358
AT2G17033			pentatricopeptide (PPR) repeat...		Potri.009G139300 [exp]	20.07	0.9212
AT4G27700			Rhodanese/Cell cycle control p...		Potri.015G008000 [exp]	20.49	0.9364
AT2G44760			Domain of unknown function (DU...		Potri.002G138600 [exp]	24.49	0.9358
AT5G20260			Exostosin family protein (.1)		Potri.006G064800 [exp]	28.14	0.8800
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Potri.006G163100 [exp]	30.14	0.9323
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Potri.010G153900 [exp]	30.59	0.9329
AT2G31890		ATRAP	RAP (.1)		Potri.017G001600 [exp]	32.31	0.9351

Compare expression of checked genes

Potri.015G006100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.