Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53660 131 / 9e-34 GRF ATGRF7 growth-regulating factor 7 (.1) AT3G13960 120 / 1e-29 GRF ATGRF5 growth-regulating factor 5 (.1) AT4G24150 118 / 2e-28 GRF ATGRF8 growth-regulating factor 8 (.1) AT4G37740 114 / 6e-27 GRF ATGRF2 growth-regulating factor 2 (.1) AT2G22840 112 / 3e-26 GRF ATGRF1 growth-regulating factor 1 (.1) AT2G06200 107 / 4e-26 GRF ATGRF6 growth-regulating factor 6 (.1) AT2G36400 109 / 8e-26 GRF ATGRF3 growth-regulating factor 3 (.1) AT3G52910 103 / 5e-24 GRF ATGRF4 growth-regulating factor 4 (.1) AT2G45480 85 / 1e-17 GRF ATGRF9 growth-regulating factor 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G022600 [exp] 705 / 0 AT5G53660 137 / 1e-35 growth-regulating factor 7 (.1) Potri.001G082700 [exp] 148 / 1e-38 AT4G24150 156 / 1e-41 growth-regulating factor 8 (.1) Potri.013G077500 [exp] 129 / 3e-33 AT3G13960 160 / 1e-45 growth-regulating factor 5 (.1) Potri.001G169100 [exp] 129 / 3e-33 AT3G13960 206 / 4e-63 growth-regulating factor 5 (.1) Potri.019G042300 [exp] 124 / 2e-31 AT3G13960 157 / 2e-44 growth-regulating factor 5 (.1) Potri.018G065400 [exp] 121 / 5e-30 AT3G13960 181 / 3e-53 growth-regulating factor 5 (.1) Potri.006G143200 [exp] 120 / 1e-29 AT3G13960 188 / 7e-56 growth-regulating factor 5 (.1) Potri.001G132600 [exp] 119 / 1e-29 AT4G37740 142 / 6e-38 growth-regulating factor 2 (.1) Potri.003G065000 [exp] 118 / 2e-29 AT3G13960 200 / 4e-61 growth-regulating factor 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015651 [exp] 133 / 1e-35 AT3G13960 155 / 5e-45 growth-regulating factor 5 (.1) Lus10037668 [exp] 131 / 8e-35 AT3G13960 156 / 1e-45 growth-regulating factor 5 (.1) Lus10020352 [exp] 125 / 1e-31 AT3G13960 167 / 2e-48 growth-regulating factor 5 (.1) Lus10009533 [exp] 126 / 6e-31 AT3G13960 162 / 7e-45 growth-regulating factor 5 (.1) Lus10008268 [exp] 122 / 5e-30 AT4G24150 156 / 3e-42 growth-regulating factor 8 (.1) Lus10033236 [exp] 122 / 9e-30 AT4G24150 151 / 1e-40 growth-regulating factor 8 (.1) Lus10004455 [exp] 114 / 9e-28 AT3G13960 150 / 8e-42 growth-regulating factor 5 (.1) Lus10014380 [exp] 111 / 1e-27 AT2G36400 181 / 5e-55 growth-regulating factor 3 (.1) Lus10011559 [exp] 110 / 9e-26 AT2G22840 290 / 3e-92 growth-regulating factor 1 (.1) Lus10019275 [exp] 110 / 2e-25 AT2G22840 283 / 1e-89 growth-regulating factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [poplar] [flax] WRC WRC
Representative CDS sequence Show only first row Show all	>Potri.015G006200.6 pacid=42775814 polypeptide=Potri.015G006200.6.p locus=Potri.015G006200 ID=Potri.015G006200.6.v4.1 annot-version=v4.1 ATGAGAATAAATTATGGGTTTGACGTCTCAGACAAAGCAGCCAAGGAAAGAAACATGACTAGTGATGTTGATTTTGGTGTGAAGCTACACCAACCTATTG ATCATCATCAATCATTCCCCTTTAGGAGGACTACTATGATGGTTCATCATGCTAATCACCACCGTCCATTTGATAATGGTCCCACATCATCATATGATAG AAACAAGTCCTTAATCAACTATAGTCGTGAACATATATACAGTGTTGGTGCTTGTGGTGGTGCAGTTGGGGTTAGGACTTTGCAGCCTTTTGACACTTCT GAATCAATTATCACTACAGCTTCTGCCTTCAAATCTCCAGGTGGCAATATGGCAGCATCCTTGGGGTTTCCTTTTACAAATGCACAATGGAACGAGCTTG AAAGACAAGCCATGATATACAAGTACATGGTGTCTTCAAATCATGTGCCTCCTCATCTTCTAATCCCAACCCCATTAATGGGAAATGGACTGGATGTGAG GTTCACAAAAAGGGCAGATCTAGAGCCAGGGAGGTGCAGGAGAACAGATGGGAAGAAATGGAGGTGCTCAAGAGATGTGGCACCTGATAAAAAATACTGT GAGCGTCATATGCATAGAGGCAGACCCCGTTCAAGAAAGCATGTGGAACTCAATACCAGCAGCAACAGCAACAGCAACAAGAAGAGCCGCCATAATCCTT CTATCTGTACAGAATCTCCTGTTACTGTGGCAATTTCTAACCCCACTATCAACAACAACAACAGTAGCTCTGCTTCTCATGATCATTTTGTTGGGACTAT GCCTCAGCCATATATTCAGACCCCAGTTTTTGTAAACAAAACCAGTGAAAAGATTGCAACTTTTGATGCTAACGGAGCCTTTGGTTCTACATACAAGGAA CCCAGGAGCTTTGACTGGATGTTGAAAGGGGGAACTGGTCCTATTGTCACAAATGATCAACAATGGCCACATCTAGTGCACACAGAAATTGGACTTGCTA CTGAAGGTTCCTTTAACAATGCTTCTGTTCTCAAGCAGCACTACCGAGAAGAGTCTCTGAATCTGAACTCATATGGAAATCTTAATGCTAGAGAAGATCA ACACCGCAGCCAATATAGTCTATTTCTTGATGGGGCTCCAAGGAGTTATATTGATGCATGGTCTAATGATGCAAATTCTGGAAACACAAGTTCTGTGTCC TCAGATGGGAAGCTCCCTCTTTCGCCACTCAGTCTATCAATGGGAGGCAATAGGTCTGTTGATGATGAAATGGGTCAGATCCAAATGGGCTTAGGCCTAA TCAAACCAGATCAAAACCAAGAATGTGGCGGTGACACCAGCAGCACACCAGGCGGGCCCTTAGCGGAGGTGTTACAATTGAGGACAGTCAACATCAATAC AGGAACTAATCAATCTTCTTCTGTGATTGAAAATGGAGATTCTATTTGTCCTCCAGCCACTAGAGTCTCTTCACCATCTGAGGTTTTGCAGAAAACACAT GCCTCACTTTCTGATAGCAGTGGTAATAGAGTCCAACACTTGCCAGTTCAAGGACCAAACCTGAAATTGCCATGCTTTGGTTAA
AA sequence Show only first row Show all	>Potri.015G006200.6 pacid=42775814 polypeptide=Potri.015G006200.6.p locus=Potri.015G006200 ID=Potri.015G006200.6.v4.1 annot-version=v4.1 MRINYGFDVSDKAAKERNMTSDVDFGVKLHQPIDHHQSFPFRRTTMMVHHANHHRPFDNGPTSSYDRNKSLINYSREHIYSVGACGGAVGVRTLQPFDTS ESIITTASAFKSPGGNMAASLGFPFTNAQWNELERQAMIYKYMVSSNHVPPHLLIPTPLMGNGLDVRFTKRADLEPGRCRRTDGKKWRCSRDVAPDKKYC ERHMHRGRPRSRKHVELNTSSNSNSNKKSRHNPSICTESPVTVAISNPTINNNNSSSASHDHFVGTMPQPYIQTPVFVNKTSEKIATFDANGAFGSTYKE PRSFDWMLKGGTGPIVTNDQQWPHLVHTEIGLATEGSFNNASVLKQHYREESLNLNSYGNLNAREDQHRSQYSLFLDGAPRSYIDAWSNDANSGNTSSVS SDGKLPLSPLSLSMGGNRSVDDEMGQIQMGLGLIKPDQNQECGGDTSSTPGGPLAEVLQLRTVNINTGTNQSSSVIENGDSICPPATRVSSPSEVLQKTH ASLSDSSGNRVQHLPVQGPNLKLPCFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53660	GRF	ATGRF7	growth-regulating factor 7 (.1...		Potri.015G006200 [exp]	0	1
					Potri.010G062440 [exp]	22.22	0.8415
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Potri.004G101000 [exp]	22.58	0.8738
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Potri.012G091400 [exp]	22.71	0.7612
AT3G53690			RING/U-box superfamily protein...		Potri.006G123500 [exp]	33.04	0.8434
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Potri.014G141500 [exp]	50.59	0.8440	Pt-ACD32.1
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Potri.007G015500 [exp]	63.00	0.8077
AT1G68660			Ribosomal protein L12/ ATP-dep...		Potri.010G096600 [exp]	64.37	0.7874
AT3G15395			unknown protein		Potri.006G225232 [exp]	74.75	0.7696
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.005G056800 [exp]	101.64	0.7950
AT3G10350			P-loop containing nucleoside t...		Potri.008G037100 [exp]	117.26	0.8068

Compare expression of checked genes

Potri.015G006200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.