Plant FIBer expression Database

Potri.015G006700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G53620 529 / 2e-178 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G023200
[exp]
1281 / 0 AT5G53620 583 / 0.0 unknown protein
Potri.016G069900
[exp]
145 / 6e-41 AT5G53620 114 / 5e-31 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032948
[exp]
988 / 0 AT5G53620 599 / 0.0 unknown protein
Lus10008846
[exp]
966 / 0 AT5G53620 594 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.015G006700.1 pacid=42775834 polypeptide=Potri.015G006700.1.p locus=Potri.015G006700 ID=Potri.015G006700.1.v4.1 annot-version=v4.1
ATGGAGGCGACGGCCGGAGTAGCGGCAGCCTCACGAGGTGGTTCGTTGTCGAGGAAGGAGTGGCGAGCGGTTACGGAGCAGCAGCATCGGAATGGTGGTG
GTGGAGATGAGAACTTGGAACAGTCAAAGCTGGGGCAATCAGATGAGAGAACAATATATGAGGTGCAGCATCGAAGAGGGCCTGCTGATGTGGACTTTTG
TTCGATCACAGTGGATGAGGGTTTAGATGATGACATTTTGCAGCAGCGAATTCACAGCATTGCTAGACAAAGAGAAGAGTTGCAACAGCTGGAGACTGAG
CTCAGAGCTCAAGTGATTGCGAGGTCTGAGATTATGGAAATGCAGAACAGATTCCATGCTCAAATCCAAGAACATGAAGATGCTGCCGCAAAGCTTCAGG
AACAACTGCATGAAAGGGGACAGACCATACATGACTTGGACAGGAGAATGGAAGAAAAAGACAGGGAACTGCATGCTATTAAATTAGATAATGAAGCGGC
CTGGGCTAAAGAGGACCTTCTCAGAGAACAAAATAAAGAACTGGCTACATTCAGAAGAGAACGTGATCATTCTGAAGCTGAAAGAGCACAGCATATACAG
CAATTGCGCGACCTTCAAGAACATATTCAAGACAAGGAAAGGCAGATTCTGGAGTTGCAGGAACAGCATAGGGCTGATCAGGAGACCATTTATTTGAAGG
ATGAACAATTGAAAGTTTGGATTGCACGTGTTCAGGAGATGGATGCCTTGCAATCTAATGCCAACCATTCCTTACAAGCTGAATTGAGAGAACGCACAGA
ACAGTACAATCAGCTTTGGCTTGGTTGTCAAAGACAGTTTGCAGAGATGGAGAGAATTCATATGCATACCATACAACAACTTCAGTTGGAGCTAGCTGAT
GCCAGAGGAAGGAGTGGATCTTACACAGATGAGTCACACCTATCTCAATCAAACCCAAAGGACGTGTCAAGCTTTAGCCAGAACAATGGAAGGCAACTAG
ATGTAAATGGCACTACTGCCTCCAATGCTAATAATGGAGCATTGCAAAATGGGAATGCAGATAATGCCCTGTCTTTTGCGTCAACTGTAAATGTACCAAA
TCAGACCAGCCATGCCGCTGGTGTTCCAATGGCTCCAACGTCCTTACTCGGGATGCCAACCTACCTTCCATCTGGGCAGGTGGCTGCACTCCACCCGTTC
ATTCTGCATCAACAGGGGATTCACCATTCTATGACATCACATGCTCCCCAATCTCATGCTGGGCATTTTCACTCAATACCAGCAATGTCATCTCTCCCAC
AGTGGCAGAATCAACAGGCTGTAACAGAGAGTGCACAATTATCTACACAGAATCAACTTGCATCATCTCAAACTGATCATGATCCTATGAGGTCAGATGT
AAAGTATGACTATGAAAGGCCTGTTAACGGCCACAACTTCCATCCAGACTATCTAGATGTTCATATCAGTCAAGGAGCAGAGCCTGATCCTGTAATCTTA
TCATCCACAGGGGAATCACAGGTTCTGGAGTCGATTGATAGAAGTTACTTGGTCACTCCTCAACCTGAGCAGAGCCTGCAAGAGATTTCTTCCCAATTTA
GTGATGCCCTGAGATTGAATACTCTTGAACAGACTATTGAAATGAAGGATCAAAATGTTTTGAACTTCAATAACCAGGGGCTAGAGGGCCAAGCTTTGAC
AGAAGAGCAGGCAAGTTCTGCTGCCAGTGCATCACTCTCTGAAACATCTGTGCATTCAGTTAATGCCAGTGAAACCACAATCAACAATGGCACTGGTGCT
GTATCATCTAAAGCATTTATCTCATCTGACCAGACAACTGTGGTCACCGGAGGAAAAACTTCAGACAACACTCTCCTTGATGAACGATCTCTCTTGGCTT
GCATAGTTCGCACTATTCCAGCTGGTGGTAGAATTCGGATCAATTCAACGCTACCAAATAGACTTGGCAAGATGCTTTCTCCTTTGCATTGGCACGATTA
CAAGAGAAAATATGGAAAGCTAGATGACTTTGTGGGTGGTCACCCAGAATTGTTTTTGATTGAGGGTGATTATATCCAGCTTCGGGAAGGAGCTCAAGAA
ATGATAGCTGCTACAGCAGCTGTTGCTAAAGTTGCTGCTGCTGCAGCAGCAGCAGCATCTCCTTACTCGTCATTTTTGCCTTCTGTGGCAGTTACTCCCA
TGGCACAATCTCATCGACTTAAGAAGGCTCCGTCAATTGAATCCAAATCTTCAAATGGTGTTAATTTTGGTGTTGCTAAAGGCATCTCCAATGTTAAAAT
TTTGAGCATATCGAAAGATTCTCACGAGCTAAATAGGCAAGATTTTGATAGATCAGGCGTAAGCAGCACTCAAAGCAAGGGCTCAATTCATGGGACAACT
AACTCAATTTATTCTGGAAAACAGCAGAGCAGGACAACCGGGGCTGCATTAACTTCTAGAAGATAG
AA sequence
>Potri.015G006700.1 pacid=42775834 polypeptide=Potri.015G006700.1.p locus=Potri.015G006700 ID=Potri.015G006700.1.v4.1 annot-version=v4.1
MEATAGVAAASRGGSLSRKEWRAVTEQQHRNGGGGDENLEQSKLGQSDERTIYEVQHRRGPADVDFCSITVDEGLDDDILQQRIHSIARQREELQQLETE
LRAQVIARSEIMEMQNRFHAQIQEHEDAAAKLQEQLHERGQTIHDLDRRMEEKDRELHAIKLDNEAAWAKEDLLREQNKELATFRRERDHSEAERAQHIQ
QLRDLQEHIQDKERQILELQEQHRADQETIYLKDEQLKVWIARVQEMDALQSNANHSLQAELRERTEQYNQLWLGCQRQFAEMERIHMHTIQQLQLELAD
ARGRSGSYTDESHLSQSNPKDVSSFSQNNGRQLDVNGTTASNANNGALQNGNADNALSFASTVNVPNQTSHAAGVPMAPTSLLGMPTYLPSGQVAALHPF
ILHQQGIHHSMTSHAPQSHAGHFHSIPAMSSLPQWQNQQAVTESAQLSTQNQLASSQTDHDPMRSDVKYDYERPVNGHNFHPDYLDVHISQGAEPDPVIL
SSTGESQVLESIDRSYLVTPQPEQSLQEISSQFSDALRLNTLEQTIEMKDQNVLNFNNQGLEGQALTEEQASSAASASLSETSVHSVNASETTINNGTGA
VSSKAFISSDQTTVVTGGKTSDNTLLDERSLLACIVRTIPAGGRIRINSTLPNRLGKMLSPLHWHDYKRKYGKLDDFVGGHPELFLIEGDYIQLREGAQE
MIAATAAVAKVAAAAAAAASPYSSFLPSVAVTPMAQSHRLKKAPSIESKSSNGVNFGVAKGISNVKILSISKDSHELNRQDFDRSGVSSTQSKGSIHGTT
NSIYSGKQQSRTTGAALTSRR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G53620 unknown protein Potri.015G006700
[exp]
0 1
AT4G37130 hydroxyproline-rich glycoprote... Potri.007G036600
[exp]
1.00 0.8720
AT5G51660 CPSF160, ATCPSF... cleavage and polyadenylation s... Potri.012G022700
[exp]
2.82 0.8298
AT3G13330 PA200 proteasome activating protein ... Potri.011G167700
[exp]
3.46 0.8416
AT3G04820 Pseudouridine synthase family ... Potri.005G051400
[exp]
4.00 0.8414
AT1G30330 ARF ARF6 auxin response factor 6 (.1.2) Potri.011G091900
[exp]
5.47 0.8063 ARF6.4
AT1G50410 SNF2 domain-containing protein... Potri.007G000700
[exp]
6.00 0.8442
AT1G75660 AtXRN3, XRN3 5'-3' exoribonuclease 3 (.1) Potri.005G237500
[exp]
7.74 0.8382 Pt-XRN2.2
AT4G15090 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, F... Potri.006G020600
[exp]
8.94 0.8390
AT4G09680 ATCTC1 conserved telomere maintenance... Potri.002G129000
[exp]
9.48 0.8235
AT1G25540 MED25, PFT1 PHYTOCHROME AND FLOWERING TIME... Potri.010G128600
[exp]
13.85 0.7613 PFT1.1

Potri.015G006700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.