Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24400 395 / 1e-138 PGL3, EMB2024 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) AT3G49360 300 / 3e-102 PGL2 6-phosphogluconolactonase 2 (.1) AT5G24420 281 / 8e-95 PGL5 6-phosphogluconolactonase 5 (.1) AT5G24410 275 / 4e-92 PGL4 6-phosphogluconolactonase 4 (.1) AT1G13700 248 / 2e-81 PGL1 6-phosphogluconolactonase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G024400 [exp] 525 / 0 AT5G24400 384 / 3e-134 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.015G007300 [exp] 417 / 2e-148 AT5G24400 357 / 2e-124 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.012G020100 [exp] 310 / 2e-106 AT5G24400 229 / 9e-75 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.010G157200 [exp] 281 / 8e-95 AT1G13700 383 / 1e-135 6-phosphogluconolactonase 1 (.1) Potri.008G097200 [exp] 272 / 2e-90 AT1G13700 386 / 6e-136 6-phosphogluconolactonase 1 (.1) Potri.015G008401 [exp] 91 / 4e-23 AT5G24400 77 / 3e-18 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022352 [exp] 425 / 3e-150 AT5G24400 382 / 2e-133 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Lus10036919 [exp] 296 / 1e-100 AT1G13700 383 / 1e-135 6-phosphogluconolactonase 1 (.1) Lus10037065 [exp] 295 / 7e-100 AT1G13700 383 / 1e-135 6-phosphogluconolactonase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [poplar] [flax] ISOCOT_Fold PF01182 [poplar] [flax] Glucosamine_iso Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
Representative CDS sequence Show only first row Show all	>Potri.015G007200.2 pacid=42775465 polypeptide=Potri.015G007200.2.p locus=Potri.015G007200 ID=Potri.015G007200.2.v4.1 annot-version=v4.1 ATGGCTACTGCTTCTTCATCTCTCACCTTCTCCACTTCCCTGCCAAAATTTTGCAGACCCTACTCCATTTCTAGAACCCCACCACCACAGGTATCAGTCT ATTTTAAGAAACTCTCTATCAGTTCTTCTTTAAAGATATCAAGAAGAACAACAACAAGGGCATCATCCATGACTTCTTCTGGGATCACCACCATTGATCA GAATAACAAGAAGGTAGTGGAAGTGTTTGATACGGAGGAGGATTTGGCTGTGTCTCTTGCAAAATACACTGCTGATTTATCTGATAAGTTTGCTAAAGAA AGAGGGGCTTTTACTGTTGTTGTATCTGGTGGTTCTCTCATTAAGTCCCTCAGGAAATTGGTGGAGGCACCTTATGTGGATTCAATAGATTGGTCAAGAT GGCACGTGTTTTGGGTGGATGAGAGAGTTGTTCCTAAAGATCATCCAGACAGTAACTACAAACTTGCTTTTGATGGTTTCCTCTCAAAGGTACCAATACC CCCTGGTAATGTTTATGCCATCAACGATGCCCTGTCTTCTGAGGGTGCTGCGGATGATTATGAAACTTGTCTCAAACATCTGGTTCATACTGGTGTGATA AATATATCTTCATTGAGCGGGTTCCCAAAGTTTGATCTCATGCTTGTGGGAATGGGTCCAGATGGACATGTAGCCTCTCTGTTCCCTGGTCATCCACTCC TCAAGGAAAACCAGAAATGGGTTACTCACATCACAGATTCTCCAAAACCACCCCCAGAGAGAATTACCTTTACCTTCCCTGTCATCAACTCATCTGCATA CATTGCTCTTGTGGTGTGCGGTGCTGGTAAAGCTAGCATAGTGCAGACAGCATTGGGAAAGAGTCAAAACTCTGAGGTGTTTCCTGTTCAAATGGTTTCA CCTGAAGGGGAGTTGAAGTGGTTTTTGGACAAAGATGCGGCTTCAAAGCTGTAG
AA sequence Show only first row Show all	>Potri.015G007200.2 pacid=42775465 polypeptide=Potri.015G007200.2.p locus=Potri.015G007200 ID=Potri.015G007200.2.v4.1 annot-version=v4.1 MATASSSLTFSTSLPKFCRPYSISRTPPPQVSVYFKKLSISSSLKISRRTTTRASSMTSSGITTIDQNNKKVVEVFDTEEDLAVSLAKYTADLSDKFAKE RGAFTVVVSGGSLIKSLRKLVEAPYVDSIDWSRWHVFWVDERVVPKDHPDSNYKLAFDGFLSKVPIPPGNVYAINDALSSEGAADDYETCLKHLVHTGVI NISSLSGFPKFDLMLVGMGPDGHVASLFPGHPLLKENQKWVTHITDSPKPPPERITFTFPVINSSAYIALVVCGAGKASIVQTALGKSQNSEVFPVQMVS PEGELKWFLDKDAASKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Potri.015G007200 [exp]	0	1
AT4G15802		AtHSBP	Arabidopsis thaliana heat shoc...		Potri.010G025000 [exp]	11.61	0.7424
AT2G44060			Late embryogenesis abundant pr...		Potri.007G146300 [exp]	12.04	0.6903
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Potri.002G027200 [exp]	14.69	0.7629	AVA.1
AT1G55805			BolA-like family protein (.1)		Potri.012G036800 [exp]	29.22	0.7061
AT2G35680			Phosphotyrosine protein phosph...		Potri.002G136700 [exp]	32.74	0.6717
AT2G37580			RING/U-box superfamily protein...		Potri.003G184800 [exp]	45.56	0.7094
AT4G00585			unknown protein		Potri.014G079800 [exp]	45.78	0.6182
AT3G08610			unknown protein		Potri.016G140900 [exp]	51.00	0.6784
AT1G49140			Complex I subunit NDUFS6 (.1)		Potri.015G054700 [exp]	54.22	0.7054
AT3G23325			Splicing factor 3B subunit 5/R...		Potri.010G070500 [exp]	59.89	0.6938

Compare expression of checked genes

Potri.015G007200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.