Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24400 357 / 1e-124 PGL3, EMB2024 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) AT3G49360 302 / 7e-104 PGL2 6-phosphogluconolactonase 2 (.1) AT5G24410 275 / 3e-93 PGL4 6-phosphogluconolactonase 4 (.1) AT5G24420 271 / 9e-92 PGL5 6-phosphogluconolactonase 5 (.1) AT1G13700 240 / 3e-79 PGL1 6-phosphogluconolactonase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G007200 [exp] 420 / 1e-149 AT5G24400 395 / 1e-138 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.012G024400 [exp] 420 / 2e-149 AT5G24400 384 / 3e-134 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.012G020100 [exp] 277 / 2e-94 AT5G24400 229 / 9e-75 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.010G157200 [exp] 260 / 3e-87 AT1G13700 383 / 1e-135 6-phosphogluconolactonase 1 (.1) Potri.008G097200 [exp] 252 / 2e-83 AT1G13700 386 / 6e-136 6-phosphogluconolactonase 1 (.1) Potri.015G008401 [exp] 76 / 5e-18 AT5G24400 77 / 3e-18 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022352 [exp] 381 / 6e-134 AT5G24400 382 / 2e-133 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Lus10036919 [exp] 278 / 2e-94 AT1G13700 383 / 1e-135 6-phosphogluconolactonase 1 (.1) Lus10037065 [exp] 276 / 9e-94 AT1G13700 383 / 1e-135 6-phosphogluconolactonase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [poplar] [flax] ISOCOT_Fold PF01182 [poplar] [flax] Glucosamine_iso Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
Representative CDS sequence Show only first row Show all	>Potri.015G007300.1 pacid=42776081 polypeptide=Potri.015G007300.1.p locus=Potri.015G007300 ID=Potri.015G007300.1.v4.1 annot-version=v4.1 ATGGCAGATCAGAATAACAAGAAAGTGGTGAAGGTGTATGACACGGAACAGGATGTGGCTGTTTCCTTGGCCAAATATGTTGCCGATTTGTCAGCTAAAT TTGCTAAAGAGAGAGGGTCTTTCACTGTTGTTTTGTCTGGAGGTTATCTCATTGACAGCATCAGGAAATTGACAGAGCCGCCTTATGTTGATTCGGTAGA GTGGTCAAAATGGCATGTTTTCTGGGTGGATGAGAGAGTTGTTCCTAGGAATCATGTTGACAGTAACTATAAACTTGCCTTTGATGGTTTTCTCTCTAAG GTACCGATCCCTGCCGGTCAGGTTTATGCCATCAATGATGCCCTGTCAGCTGAAGGTGCAGCTGAGGATTACCAAACCGTTCTCAAGCATTTGGTTGATA CTGGGGTGTTAGCCAAATCATCGGTGACTGGATTCCCGAAGTTTGATCTCATGCTTCTGGGGATGGGTCCGGATGGACATGTAGCTTCTCTGTTCCCTGG GCATCCACTTCTCGAGGAAAATGTGAAATGGGTTACTCACATTATGGACTCACCAAAACCACCTCCACAGAGAATTACCTTTACCTTTCCTGTCATCAAT TCATCTGCATATATAGCCATGGTGGTGTGCGGTCCTGGTGAAGTTGATGCGGTTTACAAAGCATTGGGAAAGACTGAAAATCCCGAATTGCTGCCTGTTC AGAGGGTGACACCAGAAGAAGAATTGAGGTGGTTTTTGGACAAAGTTGCAGCTTCGAAGCTGCAGGAGTGA
AA sequence Show only first row Show all	>Potri.015G007300.1 pacid=42776081 polypeptide=Potri.015G007300.1.p locus=Potri.015G007300 ID=Potri.015G007300.1.v4.1 annot-version=v4.1 MADQNNKKVVKVYDTEQDVAVSLAKYVADLSAKFAKERGSFTVVLSGGYLIDSIRKLTEPPYVDSVEWSKWHVFWVDERVVPRNHVDSNYKLAFDGFLSK VPIPAGQVYAINDALSAEGAAEDYQTVLKHLVDTGVLAKSSVTGFPKFDLMLLGMGPDGHVASLFPGHPLLEENVKWVTHIMDSPKPPPQRITFTFPVIN SSAYIAMVVCGPGEVDAVYKALGKTENPELLPVQRVTPEEELRWFLDKVAASKLQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Potri.015G007300 [exp]	0	1
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Potri.018G046800 [exp]	3.74	0.7554
AT1G06330			Heavy metal transport/detoxifi...		Potri.002G005300 [exp]	4.58	0.7730
AT4G18400			unknown protein		Potri.004G133260 [exp]	5.29	0.6724
AT5G06080	AS2	LBD33	LOB domain-containing protein ...		Potri.010G200400 [exp]	9.16	0.6944	LBD33.1
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.010G243100 [exp]	10.19	0.6750	Pt-SGJ3.2
AT2G28790			Pathogenesis-related thaumatin...		Potri.009G028800 [exp]	10.81	0.7368
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Potri.005G108900 [exp]	11.83	0.7173
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.017G139000 [exp]	13.03	0.7125
AT3G55240			Plant protein 1589 of unknown ...		Potri.010G211500 [exp]	19.18	0.6615
AT1G67265		DVL3, RTFL21	DEVIL 3, ROTUNDIFOLIA like 21 ...		Potri.017G112100 [exp]	19.18	0.6848

Compare expression of checked genes

Potri.015G007300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.