Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41940 597 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G53570 587 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G49350 586 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G24390 557 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G52580 135 / 2e-33 RabGAP/TBC domain-containing protein (.1.2) AT4G28550 126 / 3e-31 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G43490 122 / 3e-29 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) AT3G59570 122 / 3e-29 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G27100 119 / 5e-29 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G54780 119 / 8e-29 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G024500 [exp] 833 / 0 AT3G49350 601 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.003G146300 [exp] 667 / 0 AT5G41940 624 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G084300 [exp] 641 / 0 AT5G41940 603 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.018G127500 [exp] 134 / 4e-33 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.001G419100 [exp] 131 / 6e-33 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.006G066300 [exp] 133 / 1e-32 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.011G135300 [exp] 128 / 9e-32 AT4G27100 667 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.005G227400 [exp] 126 / 3e-31 AT4G28550 616 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.007G132900 [exp] 126 / 1e-30 AT2G43490 808 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022356 [exp] 677 / 0 AT3G49350 650 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023237 [exp] 648 / 0 AT5G41940 571 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10033232 [exp] 605 / 0 AT5G41940 590 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008872 [exp] 480 / 4e-165 AT5G41940 582 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008839 [exp] 399 / 4e-134 AT3G49350 382 / 3e-128 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10027697 [exp] 134 / 3e-35 AT5G52580 526 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10039968 [exp] 135 / 1e-33 AT5G52580 867 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10038091 [exp] 134 / 3e-33 AT5G52580 938 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10004802 [exp] 132 / 1e-32 AT2G43490 499 / 2e-170 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Lus10006646 [exp] 132 / 2e-32 AT5G52580 939 / 0.0 RabGAP/TBC domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [poplar] [flax] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Potri.015G007400.1 pacid=42775065 polypeptide=Potri.015G007400.1.p locus=Potri.015G007400 ID=Potri.015G007400.1.v4.1 annot-version=v4.1 ATGTTAATCAGCAGCAGCAACAGTCCAAACGGCGGAATCCAGCTCTCCGGTGGCGGCGGCGGCGGTAGATTCTGGTGGGAAGTTGTGCCAGTGGCGCCGT CGTCGAGAACAACTCTTGCTTTCACTGCCGTAGCCGGAATCGCCGTGTTCGCCGCCCTGCTCTACACTACCAGTAGGGGCCGGCTTAAGTCGCCATGGTC TCGAAGGAAGAGAAAACATGCCCTTACTCCTAGGCAATGGAAAAGTTTGTTTACACCAGATGGCAAACTCCGTGATGGCGGAGTTACGTTTTTGAAGAAA GTTCGAAGCGGGGGTATTGATCCAAGTATTAGAACAGAGGTCTGGCCATTCCTCCTTGGAGTATATGACTTGAATAGTACCTCAGAAGAGAGAGAGATTA TAAGAATCCAGAAAAGAAAGGAATATGAGAATTTTCGCAGACAGTGCCGTCGACTTCGCAAACACAGCAATGATTGCTCCAAAGGAACCAGTGAAAGAAG CTGTATTGAGGACAGCGGAAGTCTTGCTGAAGACTCTGACTATTCAAGTTATGAAGATGTGGTTAGTGCCAGGGAGTCTCTTTCCAGCGAGGAAAGGAGT CCTGATGTTGAGGACTCTGATGACCCTTCCAGTGCACTGTTGGAAGGTTATGATGCTTCAGGACAGACCACAAACACTGATGCCTCTGCACTAAACACCG AGTCTTCTGACTCAGAATCTTCTGAAGATCCTGAAGTCATTCAGGCTTCCTCCTCTTCAGAGGGCAGGGAAGAGAATGATCTTGATGTGCCTTTGAAAGA GAACACTTCTCCCTCAAGGACTGAGCTCCATCCAAACCAATGCGCTGGTGAAAATTTTGCCACATGGCAGCGGATCATTCGTGTTGATGCAGTGCGAGCC AATGCTGAATGGATTCCATATTCTCCGTCTCAGGCAACAGTTTCAGAGTTAAGAGCACGTCATGCTGCAGACGCTGTTGGGTTGAAGGACTATGATTCGC TGGAACCCTGCAGAATTTTCCATGCTGCAAGACTAGTTGCTATTCTTGAAGCCTATGCAGTCTATGACCCTGAAATTGGGTATTGCCAGGGCATGAGTGA TCTACTTTCTCCAATAATTGCAGTGGTCACAGAGGATCACGAGGCTTTCTGGTGTTTTGTGGGTTTCATGAGAAAGGCTAGGCATAATTTTAGGCTTGAT GAAGTGGGGATTCGAAGGCAACTCAGTATTGTTTCCAAGATTATCAAATGCAAAGACTCCCACCTCTACAGGCACTTGGAGAAGCTACAGGCTGAGGATT GCTTTTTTGTTTATAGGATGGTAGTGGTGCTGTTCAGGAGAGAATTGACATTTGAACAGACAATTTGCCTCTGGGAGGTGATGTGGGCAGATCAGGCAGC AATAAGGGCCGGTATTGGAAAGTCTGCTTGGAGCAGGATAAGGCAGCGAGCACCACCAACAGAGGATTTATTGCTTTATGCTATTGCAGCTTCTGTGTTA CAGAAAAGGAAATTAATCATAGAGAAATATAGCAGCATGGACGAGATCTTAAGGGAATGCAATAGCATGTCTGGGCACCTTGATGTATGGAAACTCCTCG ACGATGCGCATAATCTGGTAGTGAACCTTCATGACAAGATAGAGGCACCCTTCCGATGA
AA sequence Show only first row Show all	>Potri.015G007400.1 pacid=42775065 polypeptide=Potri.015G007400.1.p locus=Potri.015G007400 ID=Potri.015G007400.1.v4.1 annot-version=v4.1 MLISSSNSPNGGIQLSGGGGGGRFWWEVVPVAPSSRTTLAFTAVAGIAVFAALLYTTSRGRLKSPWSRRKRKHALTPRQWKSLFTPDGKLRDGGVTFLKK VRSGGIDPSIRTEVWPFLLGVYDLNSTSEEREIIRIQKRKEYENFRRQCRRLRKHSNDCSKGTSERSCIEDSGSLAEDSDYSSYEDVVSARESLSSEERS PDVEDSDDPSSALLEGYDASGQTTNTDASALNTESSDSESSEDPEVIQASSSSEGREENDLDVPLKENTSPSRTELHPNQCAGENFATWQRIIRVDAVRA NAEWIPYSPSQATVSELRARHAADAVGLKDYDSLEPCRIFHAARLVAILEAYAVYDPEIGYCQGMSDLLSPIIAVVTEDHEAFWCFVGFMRKARHNFRLD EVGIRRQLSIVSKIIKCKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELTFEQTICLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTEDLLLYAIAASVL QKRKLIIEKYSSMDEILRECNSMSGHLDVWKLLDDAHNLVVNLHDKIEAPFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Potri.015G007400 [exp]	0	1
AT4G34310			alpha/beta-Hydrolases superfam...		Potri.002G128201 [exp]	7.07	0.6168
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.001G241700 [exp]	13.03	0.5771
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Potri.017G097200 [exp]	15.65	0.5395
					Potri.008G195300 [exp]	28.24	0.6103
AT4G02600		MLO1, ATMLO1	MILDEW RESISTANCE LOCUS O 1, S...		Potri.013G069900 [exp]	34.32	0.5310
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Potri.002G221100 [exp]	36.46	0.5843
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.006G023400 [exp]	49.19	0.5357
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.007G109400 [exp]	52.01	0.5658
AT2G21120			Protein of unknown function (D...		Potri.001G305700 [exp]	57.13	0.5489
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Potri.007G074800 [exp]	79.14	0.5524

Compare expression of checked genes

Potri.015G007400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.