Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53560 153 / 8e-49 B5#2, ATB5-A, ATCB5-E ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) AT2G32720 128 / 4e-39 B5 #4, B5#4, ATCB5-B ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) AT5G48810 124 / 3e-37 B5#3, ATB5-B, ATCB5-D ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) AT1G26340 116 / 2e-34 B5 #6, B5#6, ATCB5-A ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) AT2G46650 115 / 4e-34 B5 #1, B5#1, ATCB5-C ARABIDOPSIS CYTOCHROME B5 ISOFORM C, cytochrome B5 isoform C (.1) AT1G37130 81 / 1e-18 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT1G77760 77 / 3e-17 GNR1, NIA1 nitrate reductase 1 (.1) AT1G60660 66 / 6e-15 B5 #5, B5#5, ATCB5LP ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) AT5G09680 54 / 2e-09 RLF reduced lateral root formation (.1.2) AT3G61580 54 / 2e-09 AtSLD1 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G024600 [exp] 206 / 4e-70 AT5G53560 163 / 5e-53 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.017G054300 [exp] 135 / 7e-42 AT2G32720 221 / 6e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.001G314200 [exp] 134 / 1e-41 AT2G32720 199 / 3e-67 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.002G242500 [exp] 119 / 2e-35 AT2G32720 221 / 7e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.010G156900 [exp] 103 / 2e-29 AT1G26340 166 / 4e-54 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Potri.014G167550 [exp] 95 / 2e-26 AT5G53560 66 / 1e-15 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.014G019200 [exp] 95 / 6e-26 AT5G48810 115 / 8e-34 ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) Potri.004G157800 [exp] 76 / 4e-19 AT5G53560 47 / 2e-08 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.002G088600 [exp] 77 / 2e-17 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008838 [exp] 156 / 3e-50 AT5G53560 232 / 3e-80 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10022357 [exp] 155 / 1e-49 AT5G53560 231 / 2e-79 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10043137 [exp] 126 / 3e-38 AT2G32720 218 / 2e-74 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10032612 [exp] 126 / 3e-38 AT2G32720 218 / 2e-74 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10011858 [exp] 118 / 6e-35 AT2G32720 211 / 5e-72 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10022794 [exp] 117 / 1e-34 AT2G32720 211 / 1e-71 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10005992 [exp] 116 / 3e-34 AT5G53560 144 / 2e-45 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10030219 [exp] 116 / 3e-34 AT5G53560 151 / 4e-48 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10010111 [exp] 115 / 6e-34 AT2G32720 137 / 8e-43 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10012615 [exp] 114 / 2e-33 AT2G32720 135 / 4e-42 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [poplar] [flax] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G007600.1 pacid=42775602 polypeptide=Potri.015G007600.1.p locus=Potri.015G007600 ID=Potri.015G007600.1.v4.1 annot-version=v4.1 ATGGCTTCTTCAAAGGTTTACTTGTTCGATGAGATCGCCAAGCACAACAAAACCGAGGATTGTTGGCTTATTATCTCCGGCAAGGTGTATGATGTCACCT CGTTTATGGATGATCATCCTGGAGGCGGAGAAGTTTTGCTGTCATCAACAGGGAAAGATGCAACGAATGATTTTGAAGATGTTGGTCACAGCGATGATGC TAGAGGGATGATGGGAAAGTATGTCATTGGTGAGGTAGATGTAACAACTGTTCCAACGAAACGTCTTTACGTAGCACCAGGTTTGGGAGGAACAAGCTCC AAAGATGACAAGTCTGAGTTTCTGATTAAGATCTTGCAGCTACTCGTGCCACTCTTAATCTTGGGCTTAGCTCTTGCTGCCCGAACCTACACCAAGAAAG AGTAG
AA sequence Show only first row Show all	>Potri.015G007600.1 pacid=42775602 polypeptide=Potri.015G007600.1.p locus=Potri.015G007600 ID=Potri.015G007600.1.v4.1 annot-version=v4.1 MASSKVYLFDEIAKHNKTEDCWLIISGKVYDVTSFMDDHPGGGEVLLSSTGKDATNDFEDVGHSDDARGMMGKYVIGEVDVTTVPTKRLYVAPGLGGTSS KDDKSEFLIKILQLLVPLLILGLALAARTYTKKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.015G007600 [exp]	0	1
AT3G26760			NAD(P)-binding Rossmann-fold s...		Potri.014G145800 [exp]	3.16	0.8592
AT5G38530		TSBtype2	tryptophan synthase beta type ...		Potri.017G109600 [exp]	4.47	0.8730
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Potri.017G014100 [exp]	6.00	0.8683
AT5G04160			Nucleotide-sugar transporter f...		Potri.016G043200 [exp]	8.48	0.8797
AT1G35180			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.005G231600 [exp]	9.59	0.9039
AT2G44940	AP2_ERF		Integrase-type DNA-binding sup...		Potri.014G055700 [exp]	9.94	0.8632
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.019G118900 [exp]	14.00	0.8885
AT3G18800			unknown protein		Potri.001G309000 [exp]	19.20	0.7852
AT4G27280			Calcium-binding EF-hand family...		Potri.011G039600 [exp]	23.43	0.7581
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Potri.007G009100 [exp]	23.49	0.7277	Pt-MDH.1

Compare expression of checked genes

Potri.015G007600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.