Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27680 615 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G53540 602 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G02890 296 / 2e-90 AAA-type ATPase family protein (.1.2) AT4G24860 293 / 9e-90 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G02480 292 / 6e-89 AAA-type ATPase family protein (.1) AT1G50140 283 / 4e-87 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G64110 281 / 4e-87 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT3G19740 282 / 2e-86 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52882 271 / 1e-83 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G28000 269 / 1e-82 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G025351 [exp] 348 / 3e-119 AT4G27680 322 / 5e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G097600 [exp] 285 / 1e-88 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.014G131000 [exp] 288 / 1e-87 AT1G02890 1432 / 0.0 AAA-type ATPase family protein (.1.2) Potri.002G205900 [exp] 286 / 9e-87 AT1G02890 1445 / 0.0 AAA-type ATPase family protein (.1.2) Potri.012G096300 [exp] 283 / 6e-86 AT4G02480 1153 / 0.0 AAA-type ATPase family protein (.1) Potri.012G035400 [exp] 278 / 6e-86 AT5G52882 1137 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G026900 [exp] 277 / 1e-85 AT5G52882 1146 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G133700 [exp] 277 / 1e-85 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.015G094100 [exp] 281 / 6e-85 AT4G02480 1128 / 0.0 AAA-type ATPase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008835 [exp] 638 / 0 AT4G27680 649 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022361 [exp] 625 / 0 AT4G27680 632 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024692 [exp] 289 / 3e-90 AT1G64110 1176 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10028752 [exp] 286 / 3e-89 AT1G64110 1165 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10017535 [exp] 285 / 2e-88 AT1G64110 1157 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10010204 [exp] 284 / 4e-87 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10036347 [exp] 286 / 9e-87 AT4G02480 1395 / 0.0 AAA-type ATPase family protein (.1) Lus10010282 [exp] 285 / 2e-86 AT4G02480 1408 / 0.0 AAA-type ATPase family protein (.1) Lus10017405 [exp] 276 / 4e-84 AT3G19740 1223 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027551 [exp] 266 / 1e-81 AT5G52882 1136 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF07728 [poplar] [flax] AAA_5 AAA domain (dynein-related subfamily)
Representative CDS sequence Show only first row Show all	>Potri.015G007700.1 pacid=42776039 polypeptide=Potri.015G007700.1.p locus=Potri.015G007700 ID=Potri.015G007700.1.v4.1 annot-version=v4.1 ATGAGGGGTTCATCAGAAACCAAGTTTTTGCAAGAGCTACTGCTATACGCAGCAAGTGCTGCTTTGAGTTGTTTGGTATTGTTTGCTGGGCTCCGACAAC TTGACCCGAATCGTGAAGCATCAAAGAAAGCCCTTGAACATAAGAAGGAAATCGCTAAGCGTTTGGGTCGTCCTCTTATCCAAACAAACCCTTATGAGGA TGTAATAGCATGTGATGTTATAAATCCTGATCACATAGATGTGGAATTTGGGTCAATTGGAGGACTGGAAGCTATCAAGCAAGCTTTGTATGAACTGGTG ATACTTCCTCTGCGGAGACCCGAACTCTTTTCACATGGGAAACTTCTTGGTCCACAAAAGGGGGTATTGTTATATGGACCACCAGGCACTGGAAAGACCA TGCTTGCCAAAGCTATTGCAAGAGAGTCTGGAGCTGTTTTCATAAATGTGAGGATCTCTAATTTAATGAGCAAATGGTTTGGTGATGCACAAAAGCTCGT TGCTGCTGTTTTTAGCCTGGCTTATAAACTCCAGCCTGCTATTATATTTATTGACGAGGTCGACAGTTTTCTGGGCCAGCGTCGTACTACAGATCATGAG GCATTAACCAATATGAAGACTGAGTTCATGGCATTATGGGATGGGTTTACTACAGATCAGAATGCACAAGTGATGGTACTTGCCGCAACCAACCGTCCTT CAGAACTTGATGAAGCAATCCTCCGGCGTCTTCCTCAGGCCTTTGAGATTGGGATGCCTGATCAAAGAGAGAGGGCTGAGATCCTGAAGGTTGTTTTGAA AGGGGAGAAGATTGAAAACAGCATTGACTTCAACTACATAGCAAGTTTGTGTGAGGGCTACACTGGTTCGGATCTTCTTGAACTTTGCAAGAAAGCAGCT TACTTTCCTATTAGGGAAATATTGGATGAGGAGAAGAAGGGGAAAAAATCTTGTGCACCAAGGCCATTGTCCCAGGCAGACTTGCAGAGAGTTCTTGCCA CATCAACTAAGACTGGGGTTGCTGCAAATGAGTACAGTAGGTCAAGCTCACAATCACCTGGGTGGCCAAGGCAGTCAGATGATTATCAGGTTCAGGCCAC AATTAATGAGCTCTCTAAGCTCATGGTTTCTCAAATCTTGAATCTCCAGCCCCCGGATAACCAGGACACTTGA
AA sequence Show only first row Show all	>Potri.015G007700.1 pacid=42776039 polypeptide=Potri.015G007700.1.p locus=Potri.015G007700 ID=Potri.015G007700.1.v4.1 annot-version=v4.1 MRGSSETKFLQELLLYAASAALSCLVLFAGLRQLDPNREASKKALEHKKEIAKRLGRPLIQTNPYEDVIACDVINPDHIDVEFGSIGGLEAIKQALYELV ILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIARESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTTDHE ALTNMKTEFMALWDGFTTDQNAQVMVLAATNRPSELDEAILRRLPQAFEIGMPDQRERAEILKVVLKGEKIENSIDFNYIASLCEGYTGSDLLELCKKAA YFPIREILDEEKKGKKSCAPRPLSQADLQRVLATSTKTGVAANEYSRSSSQSPGWPRQSDDYQVQATINELSKLMVSQILNLQPPDNQDT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27680			P-loop containing nucleoside t...		Potri.015G007700 [exp]	0	1
AT2G20560			DNAJ heat shock family protein...		Potri.017G016100 [exp]	4.69	0.8727
AT1G61620			phosphoinositide binding (.1)		Potri.004G026800 [exp]	6.00	0.8520
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Potri.014G135590 [exp]	15.09	0.8205
AT3G04610		FLK	flowering locus KH domain, RNA...		Potri.005G056100 [exp]	15.87	0.8424
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.018G070400 [exp]	17.37	0.8656
AT5G11170			DEAD/DEAH box RNA helicase fam...		Potri.006G253100 [exp]	18.02	0.8354
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Potri.010G084800 [exp]	18.16	0.8100	PBD2.2
AT1G07310			Calcium-dependent lipid-bindin...		Potri.008G064900 [exp]	19.41	0.8263
AT5G67630			P-loop containing nucleoside t...		Potri.006G118900 [exp]	19.44	0.8328
AT4G26000		PEP	PEPPER, RNA-binding KH domain-...		Potri.018G004000 [exp]	22.69	0.8530

Compare expression of checked genes

Potri.015G007700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.