Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49320 525 / 0 Metal-dependent protein hydrolase (.1) AT5G41970 524 / 0 Metal-dependent protein hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G145900 [exp] 525 / 0 AT5G41970 557 / 0.0 Metal-dependent protein hydrolase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008867 [exp] 539 / 0 AT5G41970 507 / 0.0 Metal-dependent protein hydrolase (.1) Lus10017324 [exp] 527 / 0 AT5G41970 574 / 0.0 Metal-dependent protein hydrolase (.1) Lus10033229 [exp] 513 / 0 AT5G41970 573 / 0.0 Metal-dependent protein hydrolase (.1) Lus10000877 [exp] 421 / 8e-147 AT5G41970 456 / 9e-161 Metal-dependent protein hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03690 [poplar] [flax] UPF0160 Uncharacterised protein family (UPF0160)
Representative CDS sequence Show only first row Show all	>Potri.015G007900.1 pacid=42776138 polypeptide=Potri.015G007900.1.p locus=Potri.015G007900 ID=Potri.015G007900.1.v4.1 annot-version=v4.1 ATGTTGGGGTTTAGCAAAAACCTCTCACAAAATTTCTACAAACACCTTGTATGCAATAAGAGGTGTGTATCAAGCTCTGTTTTCTCATTCTCAACAACAA CAAATCTTGCAAAGCGAGCGGTGGGCACTCACAATGGCAAGTTTCACTGTGATGAAGCTTTAGGTTGCTTCCTCATTCGCTTAACAGACAAGTTCTCCAA TGCCCATATAATCCGTTCAAGAGACCCCCAGGTATTGGAGACACTTGATGCTGTGCTTGATGTTGGAGGGGTATATGATCCAAGTAGAGATCGTTATGAT CATCACCAGAAAGGATTTCATGAAGTTTTTGGCCATGGCTTCACTACTAAACTAAGCAGTGCGGGCCTAGTTTACAAGCATTACGGGGCAGAGATAATAG CAAAGGAGCTTCAGCTAAATGAAGGGCATCAAGATGTGCATGAGTTATTTCTAGCAGTGTATAAAAACTTTGTGGAGGCAATTGATGCTGCTGATAATGG AATTAATCAATATGACATAGATCAACCTCCTAAATACGTTAATAACACAAGCTTATCACAGAGAGTGGGGAGGTTGAACCTGGACTGGGTTGATCCTAGT CAATCCTCTGAGAGAGAGGATGAAGCCTTTCAACACGCAATGAAAGTTGCTGGAACTGAATTTATGGAGAATATTAATTTTCATGCAAAATCGTGGCTAC CAGCTCGATCAATTGTCATGGAGTGCCTTGCATCAAGAGAAGATATTGATCACAGTGGAGAAATCATGGTGCTGACAAGATCATGCCCTTGGAAGCTCCA CATATTTGAACTCGAGGAAAAAATGAAGATCAATCCTTCCATCAAATATGTTATTTACCAGGATGATAGGAGTGAAAACTGGCGAATACAGGCAGTGGCA GTGTCACCTGATAAGTTTGAGAGCCGGAAACCTCTACCATTACCTTGGAGAGGTTTGGTAGATGACGAGCTCTCCAAGGCAACAGGGATCCCTGGCTGTG TGTTTGTTCACATGAGTGGATTCATAGGTGGAAATCGAAGTTATGAAGGTGCTCTTGCTATGGCTAGAGCTTCTTTAAAGGCTTGA
AA sequence Show only first row Show all	>Potri.015G007900.1 pacid=42776138 polypeptide=Potri.015G007900.1.p locus=Potri.015G007900 ID=Potri.015G007900.1.v4.1 annot-version=v4.1 MLGFSKNLSQNFYKHLVCNKRCVSSSVFSFSTTTNLAKRAVGTHNGKFHCDEALGCFLIRLTDKFSNAHIIRSRDPQVLETLDAVLDVGGVYDPSRDRYD HHQKGFHEVFGHGFTTKLSSAGLVYKHYGAEIIAKELQLNEGHQDVHELFLAVYKNFVEAIDAADNGINQYDIDQPPKYVNNTSLSQRVGRLNLDWVDPS QSSEREDEAFQHAMKVAGTEFMENINFHAKSWLPARSIVMECLASREDIDHSGEIMVLTRSCPWKLHIFELEEKMKINPSIKYVIYQDDRSENWRIQAVA VSPDKFESRKPLPLPWRGLVDDELSKATGIPGCVFVHMSGFIGGNRSYEGALAMARASLKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49320			Metal-dependent protein hydrol...		Potri.015G007900 [exp]	0	1
AT5G59500			protein C-terminal S-isoprenyl...		Potri.001G242400 [exp]	1.00	0.9319
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Potri.015G095700 [exp]	1.41	0.9251	Pt-RPL21.5
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Potri.001G409800 [exp]	2.00	0.9190
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Potri.003G080900 [exp]	3.74	0.9151	Pt-CARA.2
AT3G15000			cobalt ion binding (.1)		Potri.001G393400 [exp]	4.89	0.9133
AT1G48460			unknown protein		Potri.014G038800 [exp]	7.14	0.9222
AT3G01790			Ribosomal protein L13 family p...		Potri.017G066000 [exp]	8.66	0.8868
AT1G14990			unknown protein		Potri.010G112300 [exp]	9.79	0.8960
AT5G55140			ribosomal protein L30 family p...		Potri.014G157400 [exp]	10.58	0.8849
AT1G53345			unknown protein		Potri.015G030300 [exp]	11.48	0.8877

Compare expression of checked genes

Potri.015G007900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.