Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27720 827 / 0 Major facilitator superfamily protein (.1) AT1G64650 819 / 0 Major facilitator superfamily protein (.1.2) AT3G49310 804 / 0 Major facilitator superfamily protein (.1) AT2G23093 96 / 2e-21 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G020500 [exp] 876 / 0 AT4G27720 761 / 0.0 Major facilitator superfamily protein (.1) Potri.003G145600 [exp] 796 / 0 AT1G64650 831 / 0.0 Major facilitator superfamily protein (.1.2) Potri.001G085032 [exp] 136 / 5e-39 AT1G64650 145 / 4e-43 Major facilitator superfamily protein (.1.2) Potri.007G052700 [exp] 116 / 4e-28 AT2G23093 425 / 3e-146 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033228 [exp] 801 / 0 AT1G64650 835 / 0.0 Major facilitator superfamily protein (.1.2) Lus10003219 [exp] 756 / 0 AT1G64650 821 / 0.0 Major facilitator superfamily protein (.1.2) Lus10017322 [exp] 744 / 0 AT1G64650 799 / 0.0 Major facilitator superfamily protein (.1.2) Lus10000337 [exp] 303 / 2e-102 AT1G64650 308 / 2e-105 Major facilitator superfamily protein (.1.2) Lus10000336 [exp] 171 / 1e-49 AT1G64650 170 / 1e-52 Major facilitator superfamily protein (.1.2) Lus10011083 [exp] 122 / 3e-30 AT2G23093 502 / 1e-176 Major facilitator superfamily protein (.1) Lus10014854 [exp] 116 / 4e-28 AT2G23093 499 / 2e-175 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF05631 [poplar] [flax] MFS_5 Sugar-tranasporters, 12 TM
Representative CDS sequence Show only first row Show all	>Potri.015G008100.1 pacid=42775679 polypeptide=Potri.015G008100.1.p locus=Potri.015G008100 ID=Potri.015G008100.1.v4.1 annot-version=v4.1 ATGGAAGCCTTTTACTATTTGGTTTTTGCGGCATTAAGTGCCGTAGTGTTTGGAGTTGAGATAAGCAAGACAACAAAAGATCGAATCAATACATCTCCTG CTTTCAATTCTTTCAAGAATAACTACCTTGTAGTGTACTCTCTTATGATGGCTGGTGATTGGTTGCAAGGTCCATATGTTTACTTCCTTTATACTACATA TGGCTTTGGGAAAGGGGAGATTGGGCAGCTTTTTATTGCTGGTTTTGGGTCCTCCATGCTGTTTGGGACGATTGTTGGATCTTTGGCTGATAAACAGGGT CGAAGGAGAGCATGTGTGACTTATTGCATTACCTATATACTGAGCTGCATTACCAAGCATTCTCCTCAGTACAGAGTTTTAATGATAGGCCGTGTCTTGG GAGGTATCGCCACTTCTCTCCTATTTTCATCATTTGAGTCATGGCTGGTCGCAGAACACAATAAGAGGGGCTTTGATCAACAATGGCTGTCACTGACATT TTCAAAGGCAATTTTTCTGGGAAATGGACTTGTGGCTATCTTGTCAGGATTGTTTGGAAACTTTCTTGTAGATACATTTCAACTTGGCCCTGTGGCTCCT TTTGATGCTGCTGCATGCTTTCTTGCAATTGGAATGGCTGTTATTTTGTCATCATGGACAGAGAACTACGGAGATCCTTCAGAGAACAAGGACTTGATTA CCCAATTCAGGGGTGCTGCCGTGGCCATTGCTTCTGATGAGAAAATTGCTTTGCTGGGTGCAATTCAGTCTCTGTTTGAAGGTTCTATGTATACCTTTGT GTTCCTCTGGACACCTGCTTTGAGCCCAAACGATGAGGAAATTCCTCATGGATTTATTTTTGCAACATTCATGTTGGCATCAATGTTGGGAAGCTCTATT GCATCTCGGTTGATGGCCCGCTCATCACCCAGGGTAGAGAGCTACATGCAGATTGTTTTCATTGTCTCATCAGCATCTCTTCTGCTTCCTATTGTAACCA GTTTCTTAGTAGCACCTTCTAAAGTTAAGGGTGGCAGCATGTCATTATCAGGCTGTCTCCAGATGCTTGGCTTCTGCACCTTTGAGGCTTGTGTAGGGAT ATTCTGGCCTTCTATTATGAAGATGAGGTCCCAATACATTCCTGAGGAGGCCAGAAGCACCATTATGAACTTCTTCCGCATTCCACTCAATATCTTTGTG TGCGTTGTTTTATACAATGTCAATGCATTCCCTATCACTGTTATGTTTGGTATGTGCTCGATTTTCCTTGTGGTGGCGTCTATCTTGCAGAGGAGGCTCT TGGTGATTGCAGAAAAGCAAAAGACAGAAGTCTGGGAAATGAAGGAAAGGGATAATGAGGCAGAGCCACTGAACATTTGA
AA sequence Show only first row Show all	>Potri.015G008100.1 pacid=42775679 polypeptide=Potri.015G008100.1.p locus=Potri.015G008100 ID=Potri.015G008100.1.v4.1 annot-version=v4.1 MEAFYYLVFAALSAVVFGVEISKTTKDRINTSPAFNSFKNNYLVVYSLMMAGDWLQGPYVYFLYTTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQG RRRACVTYCITYILSCITKHSPQYRVLMIGRVLGGIATSLLFSSFESWLVAEHNKRGFDQQWLSLTFSKAIFLGNGLVAILSGLFGNFLVDTFQLGPVAP FDAAACFLAIGMAVILSSWTENYGDPSENKDLITQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSI ASRLMARSSPRVESYMQIVFIVSSASLLLPIVTSFLVAPSKVKGGSMSLSGCLQMLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFV CVVLYNVNAFPITVMFGMCSIFLVVASILQRRLLVIAEKQKTEVWEMKERDNEAEPLNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27720			Major facilitator superfamily ...		Potri.015G008100 [exp]	0	1
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Potri.002G099800 [exp]	4.47	0.9240	Pt-CHI.3
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Potri.006G095000 [exp]	5.09	0.9035	TUB5
AT1G09430		ACLA-3	ATP-citrate lyase A-3 (.1)		Potri.013G004400 [exp]	6.24	0.9290	ACLA.3
AT3G24530			AAA-type ATPase family protein...		Potri.018G081000 [exp]	7.93	0.9158
AT1G06890			nodulin MtN21 /EamA-like trans...		Potri.019G128900 [exp]	8.66	0.9216
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Potri.016G088200 [exp]	10.77	0.9218	SYP71.2
AT3G49720			unknown protein		Potri.001G288200 [exp]	10.81	0.9128
AT3G58800			unknown protein		Potri.002G168500 [exp]	11.61	0.8951
AT3G49720			unknown protein		Potri.009G082400 [exp]	11.74	0.9197
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Potri.013G156900 [exp]	12.00	0.8986

Compare expression of checked genes

Potri.015G008100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.