Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24400 78 / 8e-19 PGL3, EMB2024 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) AT3G49360 49 / 2e-08 PGL2 6-phosphogluconolactonase 2 (.1) AT5G24420 45 / 7e-07 PGL5 6-phosphogluconolactonase 5 (.1) AT1G13700 41 / 2e-05 PGL1 6-phosphogluconolactonase 1 (.1) AT5G24410 40 / 4e-05 PGL4 6-phosphogluconolactonase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G024400 [exp] 94 / 9e-25 AT5G24400 384 / 3e-134 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.015G007200 [exp] 92 / 3e-24 AT5G24400 395 / 1e-138 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.015G007300 [exp] 76 / 2e-18 AT5G24400 357 / 2e-124 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.012G020100 [exp] 61 / 7e-13 AT5G24400 229 / 9e-75 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.008G097200 [exp] 55 / 2e-10 AT1G13700 386 / 6e-136 6-phosphogluconolactonase 1 (.1) Potri.010G157200 [exp] 53 / 8e-10 AT1G13700 383 / 1e-135 6-phosphogluconolactonase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022352 [exp] 82 / 3e-20 AT5G24400 382 / 2e-133 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Lus10036919 [exp] 59 / 9e-12 AT1G13700 383 / 1e-135 6-phosphogluconolactonase 1 (.1) Lus10037065 [exp] 59 / 9e-12 AT1G13700 383 / 1e-135 6-phosphogluconolactonase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G008401.1 pacid=42775469 polypeptide=Potri.015G008401.1.p locus=Potri.015G008401 ID=Potri.015G008401.1.v4.1 annot-version=v4.1 ATGTCATTTTTTGAGGAAATAAACTTATTTGTTTTTCCCTTGAATGTTTTGCAGGTACCAATCCTCCCAGGTGATGCTTATGCCATCAACAATGCCTTGT CGGCTGAGGGTGCAGCTGATGATTATGAAACCTGTCTCAAACTTTTGGTTCATACTGGCGTGGTAGATAAATCTTCATTGAGTGGACTCCCAAAGTTTGA TCGGATGCTTATCGGCACGGTCTGGATGGGCATGTAG
AA sequence Show only first row Show all	>Potri.015G008401.1 pacid=42775469 polypeptide=Potri.015G008401.1.p locus=Potri.015G008401 ID=Potri.015G008401.1.v4.1 annot-version=v4.1 MSFFEEINLFVFPLNVLQVPILPGDAYAINNALSAEGAADDYETCLKLLVHTGVVDKSSLSGLPKFDRMLIGTVWMGM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Potri.015G008401 [exp]	0	1
AT3G56930			DHHC-type zinc finger family p...		Potri.006G027400 [exp]	2.82	0.8994
AT3G15220			Protein kinase superfamily pro...		Potri.001G397600 [exp]	6.00	0.8809
AT3G52120			SWAP (Suppressor-of-White-APri...		Potri.009G064600 [exp]	9.32	0.8857
AT3G13850	AS2	LBD22	LOB domain-containing protein ...		Potri.003G039700 [exp]	12.84	0.8694
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Potri.008G035600 [exp]	13.22	0.8803	Pt-VPS33.2
AT5G39220			alpha/beta-Hydrolases superfam...		Potri.017G093500 [exp]	15.49	0.8633
AT1G60460			unknown protein		Potri.010G041900 [exp]	17.14	0.8780
AT4G14240			CBS domain-containing protein ...		Potri.008G202100 [exp]	18.00	0.8675
AT1G64870			unknown protein		Potri.006G252800 [exp]	19.59	0.8725
AT5G53310			myosin heavy chain-related (.1...		Potri.015G023400 [exp]	20.39	0.8622

Compare expression of checked genes

Potri.015G008401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.