Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32490 1541 / 0 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT2G35340 1479 / 0 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT3G26560 766 / 0 ATP-dependent RNA helicase, putative (.1) AT4G16680 699 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G13010 680 / 0 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT3G62310 678 / 0 RNA helicase family protein (.1) AT2G47250 674 / 0 RNA helicase family protein (.1) AT4G18465 612 / 0 RNA helicase family protein (.1) AT1G26370 555 / 0 RID1 RNA helicase family protein (.1) AT1G27900 521 / 2e-172 RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G024400 [exp] 773 / 0 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.012G034200 [exp] 765 / 0 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.010G172500 [exp] 679 / 0 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.002G192500 [exp] 672 / 0 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.014G117900 [exp] 667 / 0 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.004G052700 [exp] 602 / 0 AT4G18465 1092 / 0.0 RNA helicase family protein (.1) Potri.008G096800 [exp] 566 / 0 AT1G26370 1019 / 0.0 RNA helicase family protein (.1) Potri.010G057200 [exp] 514 / 1e-169 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.005G071500 [exp] 350 / 5e-101 AT5G10370 1979 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031647 [exp] 1525 / 0 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10033690 [exp] 1295 / 0 AT1G32490 1399 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10036783 [exp] 773 / 0 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10037145 [exp] 668 / 0 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10005261 [exp] 644 / 0 AT3G62310 1300 / 0.0 RNA helicase family protein (.1) Lus10025127 [exp] 540 / 3e-179 AT4G18465 1033 / 0.0 RNA helicase family protein (.1) Lus10037067 [exp] 525 / 3e-173 AT1G26370 927 / 0.0 RNA helicase family protein (.1) Lus10015812 [exp] 514 / 1e-169 AT1G27900 1097 / 0.0 RNA helicase family protein (.1) Lus10036991 [exp] 511 / 2e-168 AT1G27900 1089 / 0.0 RNA helicase family protein (.1) Lus10009600 [exp] 424 / 2e-137 AT5G13010 907 / 0.0 embryo defective 3011, RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF04408 [poplar] [flax] HA2 Helicase associated domain (HA2) CL0021 [poplar] [flax] OB PF07717 [poplar] [flax] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold
Representative CDS sequence Show only first row Show all	>Potri.015G008700.2 pacid=42776485 polypeptide=Potri.015G008700.2.p locus=Potri.015G008700 ID=Potri.015G008700.2.v4.1 annot-version=v4.1 ATGGGCGATGATAATCTGAAGACATGGGTATCAGATAAGCTAATGTCATTGCTTGGATATTCACAGGCAACTGTGGTTCAGTACATTATTGGAATTTCTA AACAAGCTAGTTCTTCAGCTGATGTGCTTAGTAAACTTGAGGCTTTTGGGTTTCCATCATCGACCGAAACCCAATCTTTTGCTCTAGAAATCTTTGCTAA AGTTCCCCGTAAAGCATCTGGTGGTTTAAATCTTTATCAAAAACAAGAAAGGGAAGCTGCTGTGTTGGCAAGGAAGCAGAAGACTTATCAACTTTTGGAT GCTGATGACGATGACGATGACGAGGATGATGATGCTGGTGGTATTGATAATAAGTCTTTGATTGCCACTACATCTGATAGGCACAAGAAACGGTTTAGGA AGAAGATTGAGAGTGAAGAGGATGAGGACGATGAGGTGGTCAAACAAGTGGAAGAAGCAAGACAGGTTAAAAGACGGACTTCCTCATATGAAGAAGATGA TGATGATTCTGAGGCGGAGCAAGAGAGACTGCGTGATCAGAGAGAGAGGGAACAATTAGAGAGAAATATTAGAGAACGTGATGCTGCAGGGACTCGTAAG CTAACAGAGCCAAAGTTGAAAAAGAAGGACGAAGAAGAGGCAGTTCGAAGATCAAATGCTTTGGAGAAAAATGAGCTTGACACTTTGAGAAAGGTGTCAC GACAAGAATATCTAAAGAAAAGGGAACAAAAGAAACTGGAAGAAATCAGAGATGACATTGAGGATGAACAATACCTCTTTGATGGTGTGAAGCTCACGGA AGCCGAATATCGTGAACTAAGATACAAGAAGGAAATTTATGAGCTTGTGAAAAAGAGGTCAGAGGACGTTGAGGACACGAATGAGTACAGGATGCCAGAA GCATATGATGAAGAAGGAGGCGTTAATCAGGAGAAGAGATTTTCTGTGGCCTTGCAGCGTTACAGGGATGGCAGCGCTGGAGATAAAATGAACCCATTTG CTGAACAGGAAGCTTGGGAAGATCATCAAATTCAAAAAGCAACATTGAAATATGGTTCTAAAAATAAAAAGCAAATATCTGATGATTATCAGTTTGTGTT TGAGGACCAGATTGAGTTTATCAAGGCAACGGTTGTGGAGGGTGACAAGTTTGATGATGAGCTGGCCACTGAGTCACTTGATGAGTCCAATGCAAAATCA GCTTTAGAGAAGCTTCAGGAAGATAGAAAAACCTTGCCTATCTATCCATATCGAGAAGAACTGCTCAAAGCTATCAATGATCATCAGGTTATTATCATAG TGGGAGAAACTGGTTCAGGGAAGACCACACAGATACCACAGTATCTTCATGAAGCTGGTTACACCAAGCATGGGAAGGTTGGTTGTACACAGCCAAGGCG AGTTGCTGCCATGAGTGTTGCTGCTAGAGTTTCTCAAGAAATGGGTGTCAAACTTGGGCATGAGGTTGGCTACTCCATTCGTTTTGAAGATTGCACATCA GATAAGACTGTTTTGAAATATATGACTGATGGAATGCTCTTGCGTGAATTTCTTGGCGAACCAGATCTGGCAGGCTACAGTGTTGTGATGGTGGATGAGG CACATGAAAGAACTTTGTCAACTGACATACTGTTTGGATTGGTAAAGGATATAGCCCGTTTTCGACCAGATTTAAAGTTGCTTATTTCAAGTGCAACACT TGATGCTGAGAAATTTAGTGATTACTTTGATTCTGCTCCAATTTTCAAAATTCCTGGGAGGAGGTTTCCTGTTGAGATACACTATACAAAAGCCCCGGAA GCTGATTACTTAGATGCAGCTGTTGTAACTGTACTTCAAATCCATGTGACACAGCCGCCTGGAGATATTTTAATATTTCTCACTGGTCAGGAGGAAATAG AGACAGCTGAGGAGATTATGAGGCATAGGACAAGGGGTTTGGGTACAAAAATTGCGGAACTTATTATTTGCCCTATATATGCTAACTTACCCACAGAGCT CCAAGCTAAAATATTTGAGCCCACTCCTGAAGGAGCACGGAAGGTAGTCCTTGCAACAAATATTGCAGAAACATCCTTAACAATTGATGGGATCAAGTAT GTCATAGATCCAGGTTTTTGCAAGATGAAATCATACAACCCTAGGACTGGGATGGAATCTTTGCTGGTCACACCCATTTCAAAAGCATCAGCAATGCAGC GTGCTGGCCGGTCTGGACGAACTGGTCCAGGAAAGTGTTTTCGGTTGTATACTGCTTACAATTATCTTCATGACCTGGAAGATAATACAATACCAGAAAT ACAAAGAACTAATCTGGCCAATGTTGTGCTCACTTTGAAGAGTCTTGGAATCCATGACCTAATAAATTTTGATTTTATGGATCCTCCACCTTCAGAGGCA TTACTTAAGGCTCTGGAACTGCTCTTTGCACTAAGTGCACTAAATAAACTTGGTGAGTTGACCAAAGTTGGTAGAAGAATGGCTGAGTTCCCCCTTGATC CCATGCTGTCTAAAATGATTGTTGCTTCTGACAAGTGCAAATGCTCAGATGAGATAATTTCTATTGCTGCCATGCTTTCTGTTGGAAATTCAATCTTCTA TCGTCCAAAGGACAAACAAGTTCATGCTGACAATGCCAGAATGAATTTCCACACTGGAAACGTGGGGGACCATATTGCTCTTCTCAAGGTGTATAGTTCT TGGAAGGAAACTAATTATTCGACACAATGGTGTTATGAAAATTATATTCAGGTAAGGAGTATGAAGCGAGCCAGGGATGTACGAGACCAGTTGGAGGGCC TTTTGGAGAGGGTTGAAATTGAGCTATCATCCAACCCCAATGATTTAGATGCAATAAAGAAGTCCATAACTTCTGGTTTTTTCCCCCATTCTGCTAGGCT ACAGAAGAATGGATCCTACAAAACTGTGAAACATTCACAGACGGTTCACATTCATCCCAGCTCAGGGTTGTCGCAGGTGCTCCCAAGATGGGTTATATAC CACGAGTTGGTTCTTACTACTAAGGAGTACATGAGGCAGGTAACGGAACTAAAGCCAGACTGGCTGGTAGAAATAGCTCCCCATTATTACCAGATGAAGG ATGTTGAAGATCCGGGGTCGAAGAAAATGCCACGAGGGCAGGGACGAGCATCATCGCAGCAGCTGGGTTCATAA
AA sequence Show only first row Show all	>Potri.015G008700.2 pacid=42776485 polypeptide=Potri.015G008700.2.p locus=Potri.015G008700 ID=Potri.015G008700.2.v4.1 annot-version=v4.1 MGDDNLKTWVSDKLMSLLGYSQATVVQYIIGISKQASSSADVLSKLEAFGFPSSTETQSFALEIFAKVPRKASGGLNLYQKQEREAAVLARKQKTYQLLD ADDDDDDEDDDAGGIDNKSLIATTSDRHKKRFRKKIESEEDEDDEVVKQVEEARQVKRRTSSYEEDDDDSEAEQERLRDQREREQLERNIRERDAAGTRK LTEPKLKKKDEEEAVRRSNALEKNELDTLRKVSRQEYLKKREQKKLEEIRDDIEDEQYLFDGVKLTEAEYRELRYKKEIYELVKKRSEDVEDTNEYRMPE AYDEEGGVNQEKRFSVALQRYRDGSAGDKMNPFAEQEAWEDHQIQKATLKYGSKNKKQISDDYQFVFEDQIEFIKATVVEGDKFDDELATESLDESNAKS ALEKLQEDRKTLPIYPYREELLKAINDHQVIIIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTS DKTVLKYMTDGMLLREFLGEPDLAGYSVVMVDEAHERTLSTDILFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRFPVEIHYTKAPE ADYLDAAVVTVLQIHVTQPPGDILIFLTGQEEIETAEEIMRHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKY VIDPGFCKMKSYNPRTGMESLLVTPISKASAMQRAGRSGRTGPGKCFRLYTAYNYLHDLEDNTIPEIQRTNLANVVLTLKSLGIHDLINFDFMDPPPSEA LLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASDKCKCSDEIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYSS WKETNYSTQWCYENYIQVRSMKRARDVRDQLEGLLERVEIELSSNPNDLDAIKKSITSGFFPHSARLQKNGSYKTVKHSQTVHIHPSSGLSQVLPRWVIY HELVLTTKEYMRQVTELKPDWLVEIAPHYYQMKDVEDPGSKKMPRGQGRASSQQLGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Potri.015G008700 [exp]	0	1
AT5G15270			RNA-binding KH domain-containi...		Potri.017G114400 [exp]	1.00	0.9151
AT1G20300			Pentatricopeptide repeat (PPR)...		Potri.005G066700 [exp]	2.00	0.9044
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Potri.011G049400 [exp]	3.16	0.9084
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Potri.004G130600 [exp]	3.16	0.9043
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060900 [exp]	5.19	0.9050
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Potri.001G317200 [exp]	6.00	0.8894
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.002G139500 [exp]	6.32	0.8890
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.017G047600 [exp]	7.48	0.8957
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Potri.001G341900 [exp]	8.00	0.8937
AT5G25060			RNA recognition motif (RRM)-co...		Potri.006G265700 [exp]	9.00	0.8468

Compare expression of checked genes

Potri.015G008700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.