Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24060 153 / 1e-44 DOF AtDof4,6 Dof-type zinc finger DNA-binding family protein (.1) AT3G61850 147 / 8e-43 DOF DAG1, AtDof3,7 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) AT1G64620 132 / 2e-36 DOF AtDof1,8 Dof-type zinc finger DNA-binding family protein (.1) AT2G46590 119 / 2e-31 DOF DAG2, AtDof2,5 DOF AFFECTING GERMINATION 2, Dof-type zinc finger DNA-binding family protein (.1.2) AT3G55370 112 / 1e-28 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT5G62940 110 / 3e-28 DOF AtDof5.6, HCA2 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) AT5G60200 108 / 3e-28 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT4G00940 107 / 2e-27 DOF AtDof4,1 Dof-type zinc finger DNA-binding family protein (.1) AT3G45610 106 / 2e-27 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT2G37590 106 / 8e-27 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G018700 [exp] 354 / 1e-123 AT3G61850 141 / 9e-40 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.001G086400 [exp] 246 / 3e-81 AT4G24060 176 / 5e-53 Dof-type zinc finger DNA-binding family protein (.1) Potri.003G144500 [exp] 236 / 3e-77 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1) Potri.002G174300 [exp] 206 / 9e-66 AT3G61850 229 / 8e-74 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.014G100900 [exp] 184 / 3e-57 AT3G61850 233 / 1e-75 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.012G081300 [exp] 121 / 1e-32 AT5G62940 194 / 3e-59 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Potri.015G077100 [exp] 119 / 9e-32 AT5G62940 191 / 4e-58 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Potri.009G029500 [exp] 112 / 7e-29 AT5G02460 154 / 1e-43 Dof-type zinc finger DNA-binding family protein (.1) Potri.001G238400 [exp] 112 / 8e-29 AT3G55370 160 / 9e-47 OBF-binding protein 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010113 [exp] 156 / 2e-45 AT3G61850 194 / 5e-60 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10012619 [exp] 148 / 2e-42 AT3G61850 201 / 2e-62 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10023032 [exp] 139 / 3e-39 AT1G64620 171 / 1e-50 Dof-type zinc finger DNA-binding family protein (.1) Lus10033218 [exp] 136 / 6e-38 AT1G64620 169 / 7e-50 Dof-type zinc finger DNA-binding family protein (.1) Lus10003208 [exp] 132 / 1e-35 AT4G24060 167 / 3e-48 Dof-type zinc finger DNA-binding family protein (.1) Lus10003207 [exp] 127 / 2e-34 AT4G24060 159 / 9e-46 Dof-type zinc finger DNA-binding family protein (.1) Lus10042114 [exp] 120 / 3e-34 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10017313 [exp] 125 / 4e-34 AT4G24060 171 / 8e-51 Dof-type zinc finger DNA-binding family protein (.1) Lus10002381 [exp] 122 / 2e-32 AT5G62940 166 / 4e-48 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10028611 [exp] 111 / 2e-29 AT1G21340 135 / 5e-39 Dof-type zinc finger DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [poplar] [flax] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Potri.015G009300.2 pacid=42775758 polypeptide=Potri.015G009300.2.p locus=Potri.015G009300 ID=Potri.015G009300.2.v4.1 annot-version=v4.1 ATGGATACTTCTACTCAGTGGCCACAGGGGATTGGTGTTGTTAAACCAGTGGAAGGGCCTGATATGTTAGAGAGAAGGGCAAGGCCGCAAAAGGAACAAG CTTTGAATTGTCCAAGGTGCACTTCGACCAATACAAAATTTTGTTACTACAACAACTATAGTCTGTCTCAGCCAAGATACTTTTGCAAGACTTGTAGAAG GTACTGGACTGAAGGTGGGTCTTTAAGAAATGTTCCTGTTGGTGGTGGTTCGAGAAAGAACAAGAGATCATCAAGTAATCCATCATCATCAGCTGCGGCA GCATCTGAAAAGAAGTTTCCTCTTGATCTGACCCAGCCAAATTTCCATCAGTCAGCTACTGATCAAAACCCTAAGATCCATCAAGGCCCAGATCTAAACC TAGCTTACCCTCCATCTCATATCTCAGCTATGGAGCTTCTCAAGAGTTCTGGAATGAATCCAAGGGGATTTAGTGCTTTCATGTCAATTCCCGCAGCGTC TGATTCAAACAACATGTTTTCAACTGGGTTTCCTTTGCAAGAATTCAAGCCATCAACCCAGAACTTTTCTTTAGAAGGGTTTGAAAGTGGGTATAGTAAC ATTCAAGCTGTGCATGAGACTGGTAGTAGTGCAAGGCTTTTGTTTCCTATCGAGGACTTGAAGCAGCAGGTTCCAAGTAATTCTGAATTTGAGCGCATTA ATGCTAGAGGGCAAGGAGATGGTGCTCCTGGCTATTGGAATGGAATGTTAGGTGGTGAATCATGGTCCCCAAGTGTCGGGTCTTATCAGCACCATTTTGG TCTTTGA
AA sequence Show only first row Show all	>Potri.015G009300.2 pacid=42775758 polypeptide=Potri.015G009300.2.p locus=Potri.015G009300 ID=Potri.015G009300.2.v4.1 annot-version=v4.1 MDTSTQWPQGIGVVKPVEGPDMLERRARPQKEQALNCPRCTSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSSNPSSSAAA ASEKKFPLDLTQPNFHQSATDQNPKIHQGPDLNLAYPPSHISAMELLKSSGMNPRGFSAFMSIPAASDSNNMFSTGFPLQEFKPSTQNFSLEGFESGYSN IQAVHETGSSARLLFPIEDLKQQVPSNSEFERINARGQGDGAPGYWNGMLGGESWSPSVGSYQHHFGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Potri.015G009300 [exp]	0	1
AT2G35585			unknown protein		Potri.008G140000 [exp]	5.47	0.8014
AT1G71310		RAD52-1B.2, RAD...	radiation sensitive 51-1, coba...		Potri.019G068500 [exp]	7.74	0.7633
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Potri.003G204500 [exp]	9.05	0.7886
AT1G23220			Dynein light chain type 1 fami...		Potri.008G133000 [exp]	13.22	0.7639
AT5G58010	bHLH	LRL3, bHLH082	LJRHL1-like 3 (.1)		Potri.006G135600 [exp]	13.96	0.7376
AT1G47655	DOF		Dof-type zinc finger DNA-bindi...		Potri.002G129600 [exp]	15.62	0.7763
AT4G38660			Pathogenesis-related thaumatin...		Potri.004G173200 [exp]	17.91	0.7817
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Potri.015G061400 [exp]	21.23	0.7466
					Potri.002G121800 [exp]	21.54	0.6802
AT1G21090			Cupredoxin superfamily protein...		Potri.005G192800 [exp]	22.44	0.7526

Compare expression of checked genes

Potri.015G009300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.