Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26100 809 / 0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT3G15430 157 / 5e-42 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT5G63860 115 / 1e-27 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G12350 93 / 2e-19 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G55580 89 / 9e-19 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G19420 90 / 2e-18 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT1G76950 87 / 9e-18 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 86 / 2e-17 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G16040 80 / 8e-16 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G03790 81 / 1e-15 ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G018600 [exp] 957 / 0 AT3G26100 798 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.001G402800 [exp] 172 / 2e-47 AT3G15430 723 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.011G121900 [exp] 163 / 3e-44 AT3G15430 743 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.007G100200 [exp] 118 / 1e-28 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G101800 [exp] 93 / 4e-20 AT5G16040 665 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.001G276900 [exp] 94 / 1e-19 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.017G113200 [exp] 89 / 6e-19 AT5G16040 676 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.009G071800 [exp] 89 / 2e-18 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.010G199100 [exp] 88 / 3e-18 AT3G55580 564 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006242 [exp] 795 / 0 AT3G26100 796 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10006455 [exp] 786 / 0 AT3G26100 809 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10011399 [exp] 784 / 0 AT3G26100 805 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10036945 [exp] 513 / 5e-180 AT3G26100 565 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10039618 [exp] 113 / 8e-27 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10029536 [exp] 100 / 4e-22 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10037192 [exp] 95 / 5e-20 AT1G69710 986 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10036737 [exp] 92 / 3e-19 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10036030 [exp] 91 / 6e-19 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10033543 [exp] 88 / 2e-18 AT3G02510 648 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00415 [poplar] [flax] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Potri.015G009400.2 pacid=42776666 polypeptide=Potri.015G009400.2.p locus=Potri.015G009400 ID=Potri.015G009400.2.v4.1 annot-version=v4.1 ATGGCCATGGATTCCACTACGAGTGGAACCCCAACTATACAATACCATAACATCACTGATCAGCCTGTTACAGCCATTGTTGCTGTTCCTGTCTCAACAT ATCAACGAAATCAGCGTCATTGCTTTGGGGACTCAATTCCTGGAGAATTCCCCCTAGCTGCCAATCCATCAATTGTCCTCCATGTTCTCACCACATGTAA CTTGGATCCTCAAGATCTTGCAAAACTCGAGGCAACATGTTCCTTCTTTAGGCAGCCAGCAAGCTTTGCCCCCGACTATGAATTATCCATGTCAGAGCTT GCTGCTCTTGATATGTGTCAAAAAAGAGCCATATTTAAGCCAATGACACCTGAAGAACGCCAAGATTTGAAACAAAGGTGTGGGGGCTCATGGAAACTGG TCCTGAGATTTTTGCTGGCTGGAGAAGCATGTTGCAGGAGGGAGAGATCCCAGGCAATTGCAGGACCTGGTCACAGTATTGCTGTGACATCGAATGGAGT AGCTTACTCCTTTGGCTCTAATAGCTCAGGACAACTTGGGCATGGCACCACTGAAGAGGAATGGCGACCTCGGCAAATCAGATCCCTGCAAGGCATTCGA ATTATCCAAGCAGCTGCTGGGCCTGGCAGGACAATGCTGATTAGTGATGCTGGGGAGGTTTATGCCTTTGGAAAGGACTCCTTTGGTGAAGCTGAGTATG GAGTTCAAGGAACTAAAACTGTCACAACTCCACAGCTGGTTGAGTCCTTGAAAAACATATTTGTGGTGCAAGCTGCAATAGGAAATTTCTTCACCGCTGT ATTGTCCAGAGAAGGAAGGGTTTATACGTTTTCTTGGGGCAATGATGGCAAACTTGGTCATCAGACCGAGCCAAATGATGTTGTACCCCATCCTTTGTTG GGGGCACTTGAGAACATACCAGTGGTTCAAATTGCAGCTGGATACTGTTACCTTCTTGCTCTGGCCTGTCAACCCAGTGGCATGTCGGTATACTCTGTTG GATGTGGCTTGGGTGGGAAGCTTGGACATGGATCAAGAACTGATGAGAAGTACCCACGATTGATAGAACAGTTTCAGCTTTTGAACCTTCAGCCAATGGT GGTTGCTGCTGGTGCATGGCATGCTGCCGTGGTAGGAAGGGATGGACGGGTTTGTACATGGGGTTGGGGCCGCTATGGGTGCTTGGGCCATGGAAATGAA GAGTGTGAATCGGTTCCTAAGGTGGTTGATGCTTTGAGCAAGGTCAAAGCTGTTCATGTTGCTACAGGGGATTACACAACCTTCGTGGTATCTGATGATG GTGATGTATACTCATTTGGTTGTGGTGAATCTGCTAGCCTAGGTCATAATGGTGATGGTGATGGACAGGGAAATAGGCACACTAATGTCTTAAGCCCAGA GCTAGTAACATCGTTGAAGGAGGTGAAGGAGCGAGTGGTGCAGATCAGCCTAACCAACTCCGTATACTGGAATGCTCACACCTTTGCTCTCACTGAATCA GGGAAACTTTTTGCATTTGGTGCCGGAGACAAAGGGCAGCTTGGCATGGAACTTGTTAACAACCAGACTGAAAGGGGGAATCCAGAACAAGTGGACGTGG ATCTAAGGTAG
AA sequence Show only first row Show all	>Potri.015G009400.2 pacid=42776666 polypeptide=Potri.015G009400.2.p locus=Potri.015G009400 ID=Potri.015G009400.2.v4.1 annot-version=v4.1 MAMDSTTSGTPTIQYHNITDQPVTAIVAVPVSTYQRNQRHCFGDSIPGEFPLAANPSIVLHVLTTCNLDPQDLAKLEATCSFFRQPASFAPDYELSMSEL AALDMCQKRAIFKPMTPEERQDLKQRCGGSWKLVLRFLLAGEACCRRERSQAIAGPGHSIAVTSNGVAYSFGSNSSGQLGHGTTEEEWRPRQIRSLQGIR IIQAAAGPGRTMLISDAGEVYAFGKDSFGEAEYGVQGTKTVTTPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDGKLGHQTEPNDVVPHPLL GALENIPVVQIAAGYCYLLALACQPSGMSVYSVGCGLGGKLGHGSRTDEKYPRLIEQFQLLNLQPMVVAAGAWHAAVVGRDGRVCTWGWGRYGCLGHGNE ECESVPKVVDALSKVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHNGDGDGQGNRHTNVLSPELVTSLKEVKERVVQISLTNSVYWNAHTFALTES GKLFAFGAGDKGQLGMELVNNQTERGNPEQVDVDLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26100			Regulator of chromosome conden...		Potri.015G009400 [exp]	0	1
AT3G26100			Regulator of chromosome conden...		Potri.012G018600 [exp]	7.48	0.6913
AT5G13560			unknown protein		Potri.008G048100 [exp]	8.24	0.6004
AT5G23050		AAE17	acyl-activating enzyme 17 (.1)		Potri.015G056000 [exp]	15.00	0.7483
AT3G51830		ATG5, SAC8	SAC domain-containing protein ...		Potri.016G118300 [exp]	24.81	0.6657	ATG5.1
AT4G02030			Vps51/Vps67 family (components...		Potri.014G120900 [exp]	38.57	0.6369
AT5G58510			unknown protein		Potri.009G076000 [exp]	40.62	0.6781
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.006G231000 [exp]	45.21	0.6741
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Potri.008G035300 [exp]	56.76	0.6417
AT5G58100			unknown protein		Potri.018G150600 [exp]	57.25	0.6386
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Potri.001G343500 [exp]	71.45	0.5975

Compare expression of checked genes

Potri.015G009400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.