Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24340 679 / 0 3'-5' exonuclease domain-containing protein (.1) AT1G56310 74 / 1e-13 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT2G32415 57 / 2e-08 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) AT5G35910 54 / 3e-07 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) AT1G54440 52 / 6e-07 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G020000 [exp] 80 / 1e-15 AT1G56310 655 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.013G062800 [exp] 52 / 1e-06 AT5G35910 791 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Potri.019G038701 [exp] 51 / 2e-06 AT5G35910 846 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Potri.002G229000 [exp] 50 / 5e-06 AT2G32415 1050 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022376 [exp] 627 / 0 AT5G24340 544 / 0.0 3'-5' exonuclease domain-containing protein (.1) Lus10010930 [exp] 77 / 1e-14 AT1G56310 640 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10031403 [exp] 50 / 3e-06 AT1G56310 305 / 2e-100 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10005691 [exp] 50 / 5e-06 AT5G35910 814 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10031563 [exp] 47 / 3e-05 AT2G32415 1039 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) Lus10015114 [exp] 47 / 6e-05 AT2G32415 1089 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) Lus10039170 [exp] 45 / 0.0001 AT5G35910 828 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [poplar] [flax] RNase_H PF01612 [poplar] [flax] DNA_pol_A_exo1 3'-5' exonuclease CL0280 [poplar] [flax] PIN PF01927 [poplar] [flax] Mut7-C Mut7-C RNAse domain
Representative CDS sequence Show only first row Show all	>Potri.015G009500.1 pacid=42775256 polypeptide=Potri.015G009500.1.p locus=Potri.015G009500 ID=Potri.015G009500.1.v4.1 annot-version=v4.1 ATGGATCTCCCAAGCGAAAAGCCCCTCAAAATCCACCTAGTCAATTCAACTGAGTCTCCCGAGTTCACTCACCTGACTCAGTCCCTGACTCGCTCCTCAA TCATTGGTCTGGACGCCGAGTGGAAGCCAATTCGAGGCCAAACCCACCAGCCCACTTTCCCAACTGTGTCACTCCTCCAACTCGCCTGTCAACTCGGTCA TGACTCGGACGAGTCAGAAACTTTCCTGCTTGACCTGCACTCAGTCCCTTTACCTTCAATATGGGAATTGTTGAGAGAGACTTTTGTCTCTCCTGATATT CTGAAATTGGGTTTTAAATTTAAGCAGGATTTGGTGTACTTGTCCTCAACATTTTGCTTACAAGGATGCGATCCTGGTTTTGATAAGGTGGAGCCGTATC TGGACATCACTAGCATATACTATCAGATGCAACATAAGCAACAGGGAAGGAAGGGACCGAAGGAAACCAAGAGTTTAGCAACTATCTGCAAAGAAGTACT GGGAATTTCTCTTTCAAAGGAACTTCAATGTAGTGATTGGTCACATCGTCCTCTTACAGAAGAGCAAAAAACATACGCAGCTGCTGATGCACACTGCTTG CTCAAAATATTTAATGTCTTCCAGGACAACATTGTCAAAAAAGGCAATTCTTCTAACGACATGGTGGAACTGCATTCTTCTGGTGTAAATCTTGGGTTGA AAGAAATTCTTGAGAAGCATGATATTGATGATAAAATTATTAGGATCAAATATTTTGAAGCTTCCCATATCTTCCAAGCTACTGTTTCTTCAGAAAACTG CCAAAGAATAGCTGAGGTGGATGTGGCAGTTTCCAGGACATCATCCAGAAATACCATGCCTATGAATGAATCTCTCCTGAAGATAGTGAGAAAATATGGT GAGAAAATTCTGTTGAGAGAATCTGACAGAAAACCAAAAGCTGCCAGAAAGAAAGCGAAAAAACACCCTTCACTGGTTGCAGTTACCAGAGAAAAGCAGT TGGACAATACTGGTGACTGGCAAGGCCCTCCACCATGGGACTTGTCCTTAGGTGGTGATGGATGCCCTAAGTTCCTATGTGACGTGATGATTGAAGGCTT GGCAAAACATTTACGATGTGTGGGTGTGGATGCAGCAATCCCAAGTTCAAAAAAACCAGAATCCAGGGAGTTATTGGATCAAGCATACAGGGAACAGAGA GTGCTTTTGACACGAGATGCTAAGCTATTGAGACACCAATATTTGATAAAGAATCAAATCTACAGGGTGAAGAATCTTCTTAAAAATGAACAACTACTTG AGGTAATTGAAACTTTCCAATTACAAATTAATGAGGATCAGCTGATGTCAAGGTGCACGAAATGCAATGGGAGGTTCATTCAAAAGCCACTGACAACAGA AGAGGCAGTTGAAGCTGCAAAGGGTTTCCAAAGAATTCCCGATTGCTTGTTTAACAAAAATTTAGAGTTCTGGCAGTGCATGGAATGCAATCAACTTTAC TGGGAGGGAACACAATACCACAATGCAGTTCAGAAGTTCATCGATGTCTGCAAGTTGAATGAGTAA
AA sequence Show only first row Show all	>Potri.015G009500.1 pacid=42775256 polypeptide=Potri.015G009500.1.p locus=Potri.015G009500 ID=Potri.015G009500.1.v4.1 annot-version=v4.1 MDLPSEKPLKIHLVNSTESPEFTHLTQSLTRSSIIGLDAEWKPIRGQTHQPTFPTVSLLQLACQLGHDSDESETFLLDLHSVPLPSIWELLRETFVSPDI LKLGFKFKQDLVYLSSTFCLQGCDPGFDKVEPYLDITSIYYQMQHKQQGRKGPKETKSLATICKEVLGISLSKELQCSDWSHRPLTEEQKTYAAADAHCL LKIFNVFQDNIVKKGNSSNDMVELHSSGVNLGLKEILEKHDIDDKIIRIKYFEASHIFQATVSSENCQRIAEVDVAVSRTSSRNTMPMNESLLKIVRKYG EKILLRESDRKPKAARKKAKKHPSLVAVTREKQLDNTGDWQGPPPWDLSLGGDGCPKFLCDVMIEGLAKHLRCVGVDAAIPSSKKPESRELLDQAYREQR VLLTRDAKLLRHQYLIKNQIYRVKNLLKNEQLLEVIETFQLQINEDQLMSRCTKCNGRFIQKPLTTEEAVEAAKGFQRIPDCLFNKNLEFWQCMECNQLY WEGTQYHNAVQKFIDVCKLNE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24340			3'-5' exonuclease domain-conta...		Potri.015G009500 [exp]	0	1
AT1G09300			Metallopeptidase M24 family pr...		Potri.013G007100 [exp]	8.06	0.6760
AT5G25800			Polynucleotidyl transferase, r...		Potri.005G186600 [exp]	11.13	0.7145
AT3G55480		AP-3beta, PAT2	beta-subunit of adaptor protei...		Potri.010G202800 [exp]	18.11	0.6637
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.011G169300 [exp]	26.72	0.6459	WRKY2.1
AT1G09450		AtHaspin	Haspin-related gene, Protein ...		Potri.005G003400 [exp]	29.89	0.6819
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Potri.007G112400 [exp]	35.56	0.6517
AT1G16970		KU70, ATKU70	ARABIDOPSIS THALIANA KU70 HOMO...		Potri.011G107400 [exp]	51.47	0.6560	Pt-KU70.1
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G182500 [exp]	57.82	0.6396
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Potri.001G104900 [exp]	61.96	0.6469
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Potri.001G129000 [exp]	74.16	0.5879

Compare expression of checked genes

Potri.015G009500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.