Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24330 483 / 1e-172 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT5G09790 407 / 2e-142 PDE336, SDG15, ATXR5 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) AT3G01460 50 / 3e-06 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT1G77250 47 / 2e-05 RING/FYVE/PHD-type zinc finger family protein (.1) AT3G59960 46 / 2e-05 SDG24, ASHH4 SET DOMAIN PROTEIN 24, histone-lysine N-methyltransferase ASHH4 (.1) AT4G30860 45 / 4e-05 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1) AT4G14700 44 / 0.0002 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1) AT5G44800 43 / 0.0004 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT4G12620 42 / 0.0004 ORC1B, ATORC1B, UNE13 UNFERTILIZED EMBRYO SAC 13, origin of replication complex 1B (.1) AT2G44150 42 / 0.0004 SDG7, ASHH3 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G018300 [exp] 620 / 0 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.005G058000 [exp] 416 / 1e-145 AT5G09790 481 / 2e-170 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) Potri.007G109900 [exp] 415 / 2e-145 AT5G09790 473 / 1e-167 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) Potri.002G076900 [exp] 48 / 5e-06 AT1G77250 332 / 3e-107 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.017G072460 [exp] 49 / 6e-06 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.005G182100 [exp] 47 / 2e-05 AT1G77300 807 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.005G183700 [exp] 46 / 3e-05 AT1G77250 315 / 2e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.003G126600 [exp] 46 / 4e-05 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.007G147200 [exp] 45 / 5e-05 AT2G44150 477 / 2e-169 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007782 [exp] 439 / 3e-156 AT5G24330 386 / 1e-135 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Lus10016526 [exp] 417 / 9e-148 AT5G24330 388 / 4e-136 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Lus10040794 [exp] 229 / 7e-76 AT5G24330 221 / 5e-73 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Lus10040793 [exp] 84 / 4e-20 AT5G24330 67 / 3e-15 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Lus10030864 [exp] 50 / 2e-06 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1) Lus10030625 [exp] 50 / 3e-06 AT3G01460 706 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10008796 [exp] 48 / 1e-05 AT3G01460 1574 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10038740 [exp] 47 / 1e-05 AT2G44150 399 / 5e-137 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Lus10016600 [exp] 45 / 6e-05 AT1G76710 600 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Lus10000973 [exp] 45 / 8e-05 AT1G77260 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0390 [poplar] [flax] PF00856 [poplar] [flax] SET SET domain
Representative CDS sequence Show only first row Show all	>Potri.015G009632.2 pacid=42775857 polypeptide=Potri.015G009632.2.p locus=Potri.015G009632 ID=Potri.015G009632.2.v4.1 annot-version=v4.1 ATGGCACTGAGAAGCAAGAGAAGCCAGGCTCCAAAGCCGATATTTAGATCCAAGCATGCTGACGATTACAGTGGAGTTTACTGTGAAGAATGCGGGTCAG GAGAGTCACCAGGAGAGCTACTTCTTTGTGATAAATGTGATAAAGGATTTCATTTGTTTTGTTTAAGACCTATCCTTGTCTCTGTCCCTAAAGGCTCCTG GTTTTGTCCTTCCTGTTCCAAACAAAAGATGCCCAAGTCATTTCCTCTTGTTCAAACAAAAATCATTGATTTCTTTCGCATTAAACGGTCCACAGAATCA ACTCAGAAGCTAAGTCAAGATATTCAGAAGAAGCGAAAGCGATCTGGTAGTTTAGTAATGTCGAAGAAGAGGAGGAAGTTGTTGCCATTCAATCCGAGTG AAGATCCCGAGAGGAGACTAGAACAAATGAGATCACTTGCAACAGCATTGACGGCCTCCGGGACAGAGTTTAGCAATGAACTAACTTACCGACCAAGCAT GGCACTGAGATCTGCAAATCAACCAGCTCTTGAGAAGGGAGGAATGCAGGTCTTGACAAAAGAAGATGTCGAAACCTTAAATTTGTGCAAAAGAATGATA AATAGAGGTGAATGGCCGCCTCTTATGGTTGTTTTTGATCCTGAGGAAGGGTTCACAGTAGAGGCAGATAGATTCATAAGAGACTTGACAATTATCACTG AGTATGTTGGAGATGTTGATTACTTGAAGAACCGTGAAAATGATGATGGGGATAGCATGATGACATTGCTTCATGCTGCAAATCCTTCTCAAAGCCTTGT TATATGTCCTGACAAGCGCGGGAATGTAGCTCGATTTATTAATGGTATCAACAATCACACGCAGGAAGGGAAAAAGAAGCAGAATCTAAAATGTGTGAGA TATGATGTTAATGGTGAATGCCGGGTTTTGCTGATTGCAAACAGAGATATATCAAAGGGAGAGAGGTTATATTATGACTACAATGGATATGAACATGAAT ACCCTACAGAGCATTTTGTTTAA
AA sequence Show only first row Show all	>Potri.015G009632.2 pacid=42775857 polypeptide=Potri.015G009632.2.p locus=Potri.015G009632 ID=Potri.015G009632.2.v4.1 annot-version=v4.1 MALRSKRSQAPKPIFRSKHADDYSGVYCEECGSGESPGELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSKQKMPKSFPLVQTKIIDFFRIKRSTES TQKLSQDIQKKRKRSGSLVMSKKRRKLLPFNPSEDPERRLEQMRSLATALTASGTEFSNELTYRPSMALRSANQPALEKGGMQVLTKEDVETLNLCKRMI NRGEWPPLMVVFDPEEGFTVEADRFIRDLTIITEYVGDVDYLKNRENDDGDSMMTLLHAANPSQSLVICPDKRGNVARFINGINNHTQEGKKKQNLKCVR YDVNGECRVLLIANRDISKGERLYYDYNGYEHEYPTEHFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Potri.015G009632 [exp]	0	1
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Potri.006G188700 [exp]	4.47	0.9048
AT1G71760			unknown protein		Potri.002G062800 [exp]	7.48	0.8944
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.019G129740 [exp]	8.83	0.8984
AT1G29630			5'-3' exonuclease family prote...		Potri.011G077001 [exp]	11.74	0.8967
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Potri.012G018300 [exp]	13.41	0.8737	SDG933
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Potri.008G126300 [exp]	15.81	0.8856
AT1G07270			Cell division control, Cdc6 (....		Potri.001G250200 [exp]	16.58	0.8854
AT3G59550		ATSYN3, SYN3, A...	SISTER CHROMATID COHESION 1 PR...		Potri.001G225600 [exp]	18.54	0.8874	SYN3.1
AT3G50150			Plant protein of unknown funct...		Potri.016G040100 [exp]	20.12	0.8786
AT4G16970			Protein kinase superfamily pro...		Potri.001G151900 [exp]	20.34	0.8860

Compare expression of checked genes

Potri.015G009632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.