Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24318 467 / 8e-164 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G46570 340 / 3e-115 Glycosyl hydrolase superfamily protein (.1) AT3G55430 306 / 5e-101 O-Glycosyl hydrolases family 17 protein (.1) AT2G16230 296 / 2e-96 O-Glycosyl hydrolases family 17 protein (.1) AT5G42720 291 / 5e-95 Glycosyl hydrolase family 17 protein (.1) AT4G34480 286 / 2e-92 O-Glycosyl hydrolases family 17 protein (.1) AT1G30080 277 / 6e-90 Glycosyl hydrolase superfamily protein (.1) AT2G27500 273 / 4e-89 Glycosyl hydrolase superfamily protein (.1.2.3) AT2G39640 272 / 1e-86 glycosyl hydrolase family 17 protein (.1) AT1G32860 261 / 8e-84 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G017800 [exp] 567 / 0 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.001G240000 [exp] 374 / 6e-127 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.008G056000 [exp] 355 / 4e-120 AT3G55430 494 / 1e-173 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G055900 [exp] 346 / 2e-116 AT3G55430 494 / 8e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.010G203800 [exp] 332 / 8e-111 AT3G55430 354 / 2e-118 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G183800 [exp] 301 / 4e-99 AT2G16230 515 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G261800 [exp] 300 / 2e-98 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182800 [exp] 298 / 2e-97 AT2G16230 514 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G184300 [exp] 297 / 3e-97 AT2G16230 511 / 1e-179 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023245 [exp] 461 / 8e-162 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10008865 [exp] 423 / 8e-147 AT5G24318 517 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040294 [exp] 359 / 2e-121 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1) Lus10040808 [exp] 345 / 3e-115 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10016539 [exp] 343 / 2e-114 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004962 [exp] 338 / 5e-113 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10005166 [exp] 336 / 2e-111 AT5G24318 385 / 1e-129 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10021088 [exp] 285 / 1e-93 AT5G24318 324 / 3e-108 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040461 [exp] 284 / 6e-92 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10023576 [exp] 280 / 2e-90 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Potri.015G010100.2 pacid=42775912 polypeptide=Potri.015G010100.2.p locus=Potri.015G010100 ID=Potri.015G010100.2.v4.1 annot-version=v4.1 ATGGAGAATGCCTTGGCTACGTTTTCTGCTTCAACTGTCACCACAATTTTACTTCTTGCGGCCTCAACTCTCTTTATTCAAGGAGTGGAAGGAAGTATTG GAGTAAACTATGGCACGCTGGCTAACAACCTGCCTCCACCAGCACAGGTAGCCCATTTTCTTTTAGAATCCACCATTATCAACCGCGTTAGGCTCTTTGA TGCCAGCACCGAAATTCTACGAGCCTTTGCTCACACTGGCATTGCAGTCACAGTCACAGTGACAAATGATCAAATCCCTCACCTTACCAACATAGGCTTT GCACAAGAATGGCTGAAGTCCAATGTCCAACCTCATGTGCGGACCACCAACATTGTCCGAATCTTGGTAGGCAATGAAGTAATATCAACAGCAAACAAAT TGTTAATAGCAAGCTTGGTTCCAGCTATGCAAGCTCTTCATGCAGCTTTAGTTGATGCATCATTAGACAGTAGAATCAAAATCTCTACCCCTCACTCTTT AGGCATTCTCTCAAGTTCAAGCCCACCATCCGGTGGCAAATTTCGACAAGGATATGATACACATGTTCTTAAACCGGTGCTTAGCTTCCTTAGAGCTACC AATTCACCATTCATGATTAACCCTTATCCATTCTTTGGATCCTCTCCTGAAACTCTTGATTATGCACTGTTTAGGACTAGTTCAGGCGTGTTTGATGAAA ACACCAAACTTTCTTACACAAACATGCTAGATGCGCAACTTGATGCTGTCTTTTCAGCAATGAAACTTCTTGGTTTTAGTGATATTGAGATTGTCATATC CGAAACCGGGTGGCCATCACTAGGAGATTCATCACAAGTTGGTGTTGATGCAGAAAGTGCAGCTCAATACAATAGGAATCTGATGCAGCATGTAACATCT GGAGCTGGCACCCCGCTCATGCCCAACCGGACATTTGAAACTTACATTTTCGCACTTTTTAATGAAGATCTCAAGCCAGGGCCTACCTGCGAGAGGAATT TCGGATTGTTCCTGCCGGACATGACTCCAGTGTACGATATTGGAATCCTAAGGTCAACGGTAGCTGCTGCTAGCAAATTCCACCATGCTACATATATCTC AGTCCTTACAATCGGGCTTCTAATAATTTCTAACCATGGTGACAACATGCTTTGTTAA
AA sequence Show only first row Show all	>Potri.015G010100.2 pacid=42775912 polypeptide=Potri.015G010100.2.p locus=Potri.015G010100 ID=Potri.015G010100.2.v4.1 annot-version=v4.1 MENALATFSASTVTTILLLAASTLFIQGVEGSIGVNYGTLANNLPPPAQVAHFLLESTIINRVRLFDASTEILRAFAHTGIAVTVTVTNDQIPHLTNIGF AQEWLKSNVQPHVRTTNIVRILVGNEVISTANKLLIASLVPAMQALHAALVDASLDSRIKISTPHSLGILSSSSPPSGGKFRQGYDTHVLKPVLSFLRAT NSPFMINPYPFFGSSPETLDYALFRTSSGVFDENTKLSYTNMLDAQLDAVFSAMKLLGFSDIEIVISETGWPSLGDSSQVGVDAESAAQYNRNLMQHVTS GAGTPLMPNRTFETYIFALFNEDLKPGPTCERNFGLFLPDMTPVYDIGILRSTVAAASKFHHATYISVLTIGLLIISNHGDNMLC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24318			O-Glycosyl hydrolases family 1...		Potri.015G010100 [exp]	0	1
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Potri.004G081000 [exp]	1.73	0.9402
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Potri.006G253900 [exp]	4.69	0.9395
AT1G73850			Protein of unknown function (D...		Potri.012G056400 [exp]	5.19	0.9363
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Potri.017G139500 [exp]	7.74	0.9332
AT3G50120			Plant protein of unknown funct...		Potri.001G071200 [exp]	7.93	0.9314
AT5G11620			SWIM zinc finger family protei...		Potri.006G238000 [exp]	8.12	0.9323
AT1G76770			HSP20-like chaperones superfam...		Potri.005G192700 [exp]	8.48	0.9187
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Potri.002G249700 [exp]	9.79	0.9298	Pt-SYNC2.1
AT1G65810			P-loop containing nucleoside t...		Potri.004G077600 [exp]	10.00	0.9332
AT4G39810			Polynucleotidyl transferase, r...		Potri.007G088500 [exp]	14.69	0.9268

Compare expression of checked genes

Potri.015G010100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.