Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ACBP1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27780 432 / 3e-152 ACBP2 acyl-CoA binding protein 2 (.1) AT5G53470 422 / 2e-148 ACBP1 acyl-CoA binding protein 1 (.1) AT4G24230 85 / 4e-18 ACBP3 acyl-CoA-binding domain 3 (.1.2.3.4.5.6) AT2G03430 72 / 2e-14 Ankyrin repeat family protein (.1) AT5G12320 62 / 9e-12 ankyrin repeat family protein (.1) AT5G40160 64 / 3e-11 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT4G35450 63 / 4e-11 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT3G05420 63 / 2e-10 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G27630 62 / 2e-10 ACBP5 acyl-CoA binding protein 5 (.1) AT2G17390 61 / 4e-10 AKR2B ankyrin repeat-containing 2B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G017700 [exp] 552 / 0 AT4G27780 432 / 4e-152 acyl-CoA binding protein 2 (.1) Potri.014G018700 [exp] 107 / 3e-26 AT4G24230 133 / 2e-35 acyl-CoA-binding domain 3 (.1.2.3.4.5.6) Potri.002G120200 [exp] 105 / 2e-25 AT4G24230 113 / 3e-28 acyl-CoA-binding domain 3 (.1.2.3.4.5.6) Potri.013G062000 [exp] 75 / 1e-14 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.010G185200 [exp] 72 / 1e-13 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.010G161300 [exp] 69 / 2e-13 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.009G070700 [exp] 64 / 3e-12 AT5G12320 197 / 6e-66 ankyrin repeat family protein (.1) Potri.001G295200 [exp] 66 / 5e-12 AT5G40160 317 / 4e-108 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Potri.002G213200 [exp] 66 / 1e-11 AT2G03430 96 / 2e-22 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005910 [exp] 440 / 4e-155 AT4G27780 430 / 3e-151 acyl-CoA binding protein 2 (.1) Lus10022382 [exp] 433 / 2e-152 AT4G27780 432 / 2e-152 acyl-CoA binding protein 2 (.1) Lus10007764 [exp] 100 / 2e-23 AT4G24230 141 / 1e-38 acyl-CoA-binding domain 3 (.1.2.3.4.5.6) Lus10018702 [exp] 99 / 3e-22 AT5G67360 607 / 0.0 Subtilase family protein (.1) Lus10036968 [exp] 70 / 4e-14 AT2G03430 216 / 7e-72 Ankyrin repeat family protein (.1) Lus10037116 [exp] 67 / 2e-12 AT2G03430 284 / 2e-97 Ankyrin repeat family protein (.1) Lus10009696 [exp] 63 / 7e-12 AT5G12320 184 / 7e-61 ankyrin repeat family protein (.1) Lus10036033 [exp] 63 / 1e-11 AT5G12320 186 / 2e-61 ankyrin repeat family protein (.1) Lus10014522 [exp] 64 / 5e-11 AT5G40160 322 / 3e-109 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10004499 [exp] 64 / 1e-10 AT3G05420 1019 / 0.0 acyl-CoA binding protein 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0632 [poplar] [flax] FERM_M PF00887 [poplar] [flax] ACBP Acyl CoA binding protein CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.015G010200.1 pacid=42775883 polypeptide=Potri.015G010200.1.p locus=Potri.015G010200 ID=Potri.015G010200.1.v4.1 annot-version=v4.1 ATGGCAGATTGGCAACACCTTCTCCAATCAATCTTCATAGGTCTTCTCTTCTCATACCTCCTCGCCAAACTCATTTCCATCGTCGTTTCTTTCCAAAACG ACAATCTCCATATCACCCGAAACCCAAAACCCCAATCGAACGACCCCGCCCCCGCCCCAGCCCCCGCCCCCGCAGTCCATCATTACCAGCACTCTCATGG TGACGTAGATTCGGTGGTTGCAGAACAAGGCAGTGTGCGAAACGAGAGCGTATCAGGGAGTGACGGTGATGGTGGTGGTGATGGTGATGATGATGATGAT GATTGGGAAGGTGTGGAGAGTACGGAATTGGATGAAATGTTTAGTGCAGCTACGGCATTTGTGGCTGCAGCTGCGGCGGATCGGGTTTCGTTGAAGGTAT CGAGTGATTTACAGTTGCAGCTTTATGGGTATTATAAGATTGCTACTGAAGGTCCTTGTACTAGCGCGCCTCCTTCTGCTCTCAAAATGACTGCCCGTGC CAAATGGCAAGCATGGCAGAAATTGGGTGCTATGCCACCAGAAGATGCTATGCAGAAGTACATTGATATTATTACAGAGCTGTATCCTACCTGGGCTTCT GGTTCAGCTATGAGCAAAGACAGAGATGGCGTTGGACCGAGCAAGGATGGCAAAGGACCAATGGGACCGGTTTTCAGCACTTTCGTCTATGAGGAGGAAT CAGGAACAGAGTTGAAAATGGATGCCATTCATGCGTTTGCCAGAGAAGGAGAAGTGAATAATTTGATCAAATGCATTGATGGTGGTGTTTCTGTGAACTT GAAAGATAGTGAGGGTCGGACTCCTTTGCATTGGGCGGTAGATCGTGGTCATCTTAATATTGCCGAGGTGCTTGTTGGAAAGAATGCAGACATAAATGCA AAGGATAATGAAGGCCAAACCCCGTTGCATTATGCTGCTGTCTGTGAGAGAGAAGCAATTGCTGAATATCTTGTGAAGCAAAATGCAGATACAGATGCGA AGGACAATGATGGGCAGTCCGCCCATGATCTCTGTGAGTCAGATTGGCCTTGCCTGCAACGCCCCGCAGCTTAG
AA sequence Show only first row Show all	>Potri.015G010200.1 pacid=42775883 polypeptide=Potri.015G010200.1.p locus=Potri.015G010200 ID=Potri.015G010200.1.v4.1 annot-version=v4.1 MADWQHLLQSIFIGLLFSYLLAKLISIVVSFQNDNLHITRNPKPQSNDPAPAPAPAPAVHHYQHSHGDVDSVVAEQGSVRNESVSGSDGDGGGDGDDDDD DWEGVESTELDEMFSAATAFVAAAAADRVSLKVSSDLQLQLYGYYKIATEGPCTSAPPSALKMTARAKWQAWQKLGAMPPEDAMQKYIDIITELYPTWAS GSAMSKDRDGVGPSKDGKGPMGPVFSTFVYEEESGTELKMDAIHAFAREGEVNNLIKCIDGGVSVNLKDSEGRTPLHWAVDRGHLNIAEVLVGKNADINA KDNEGQTPLHYAAVCEREAIAEYLVKQNADTDAKDNDGQSAHDLCESDWPCLQRPAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27780		ACBP2	acyl-CoA binding protein 2 (.1...		Potri.015G010200 [exp]	0	1	ACBP1.2
AT5G06140		ATSNX1	ARABIDOPSIS THALIANA SORTING N...		Potri.016G076400 [exp]	2.23	0.6912
AT3G12170			Chaperone DnaJ-domain superfam...		Potri.016G051800 [exp]	4.89	0.6185
AT2G25740			ATP-dependent protease La (LON...		Potri.018G046700 [exp]	6.32	0.6617
AT3G56460			GroES-like zinc-binding alcoho...		Potri.019G065700 [exp]	8.36	0.6032
AT4G19003		VPS25	E2F/DP family winged-helix DNA...		Potri.001G135700 [exp]	18.57	0.5773
AT3G08640			Protein of unknown function (D...		Potri.006G111300 [exp]	29.52	0.6031
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Potri.010G194300 [exp]	30.59	0.5640	Pt-SYP81.2
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Potri.010G192900 [exp]	48.49	0.4924
AT5G53180		ATPTB2	polypyrimidine tract-binding p...		Potri.012G029300 [exp]	51.14	0.5803
AT5G46170			F-box family protein (.1)		Potri.004G065900 [exp]	53.38	0.5422

Compare expression of checked genes

Potri.015G010200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.