Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27790 321 / 9e-109 Calcium-binding EF hand family protein (.1) AT5G08580 183 / 3e-54 Calcium-binding EF hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G087600 [exp] 194 / 8e-59 AT5G08580 539 / 0.0 Calcium-binding EF hand family protein (.1) Potri.007G076300 [exp] 192 / 7e-58 AT5G08580 536 / 0.0 Calcium-binding EF hand family protein (.1) Potri.004G089400 [exp] 40 / 0.001 AT1G66400 157 / 7e-50 calmodulin like 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022381 [exp] 325 / 2e-110 AT4G27790 291 / 3e-97 Calcium-binding EF hand family protein (.1) Lus10010165 [exp] 183 / 9e-55 AT5G08580 435 / 5e-153 Calcium-binding EF hand family protein (.1) Lus10017370 [exp] 176 / 9e-52 AT5G08580 437 / 5e-153 Calcium-binding EF hand family protein (.1) Lus10005911 [exp] 155 / 3e-45 AT4G27790 133 / 3e-37 Calcium-binding EF hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13202 [poplar] [flax] EF-hand_5 EF hand
Representative CDS sequence Show only first row Show all	>Potri.015G010300.2 pacid=42775825 polypeptide=Potri.015G010300.2.p locus=Potri.015G010300 ID=Potri.015G010300.2.v4.1 annot-version=v4.1 ATGGGAAGGGTGGTGGTTTATGTCCTCATAACCATAGCCTTTATTGTCTTCATGACCTTTTCTCCCATCAACAACCACGGTCGTACCACTCCTGGCCTCA ACCGCCGTCTTGGTTCCAAATTTTCAATGCCAGATTTTGATCCATTAGTCGTAAAAATGCAGAGATTAGCCGAGGAAAAAGGTTACACCGGCGAGGGTGG TGCGATAAATTTGGAAAACAATGGCTATGCCAAAGAGGTTGAGGATGCTGATGAGTATCTAAGTGATGATGGAAGGTTAAACATTACCTTAAGGTTACTT GTTTTATTCCCATTGTTAGACAAGAAACCTAGAGATGGGTTGATCAGCTTCGAGGAGCTAGAGGCATGGAATGTTGAGCAAGCTAGAGAACGCTTAGCTT ATAGGACACAGAGAGAAATCCAATCTCGGGACAAGGATGGAGATGGAGCAATTAATTTCAAGGAATATTTGCCTCAATTTTCCAATGAAGATATAGAGAG AAATGAAATGGGGCATGGTGAAGCTGGATGGTGGATGCAACAATTTAGGAATGCAGACGTTGATCGAAATGGAACCCTAGATTTCGATGAGTTTAACAAC TTCTTGCATCCCGAAGATAGTAACAATAAAGATATCCAAAAATGGATTTTGAGAGAGAAACTCAAATGCAGGCGGATGGATGATGATCGTGACGGGAAAC TCAACTTAGCAGAGTTCTCTATGTACGCTTATGATGGTAATTACAAGAGCTACGCAGAATTTGAACCTAATGTAGCTAGAGTTGGCACTGCAGAAGAGAA ATTTCTTGAGCTTGATGTGAACAAAGACAATTTTTTGTCGGAGGAGGAGCTAATACCCATGATCCCGTACCTCAAGCCTGGAGAACTATCGTATGCTAAG CATTACACCAGCTACTTGATTCATGAGACTGATGAGAATGGAGATGGTTATTTATCTATAGATGAAATGCTGAATCATGAATATACATTCTATGGGACAT TTTTCCAAGACGATGAAGATTATGACGATGAGTTCCATGAAGAACTGTAA
AA sequence Show only first row Show all	>Potri.015G010300.2 pacid=42775825 polypeptide=Potri.015G010300.2.p locus=Potri.015G010300 ID=Potri.015G010300.2.v4.1 annot-version=v4.1 MGRVVVYVLITIAFIVFMTFSPINNHGRTTPGLNRRLGSKFSMPDFDPLVVKMQRLAEEKGYTGEGGAINLENNGYAKEVEDADEYLSDDGRLNITLRLL VLFPLLDKKPRDGLISFEELEAWNVEQARERLAYRTQREIQSRDKDGDGAINFKEYLPQFSNEDIERNEMGHGEAGWWMQQFRNADVDRNGTLDFDEFNN FLHPEDSNNKDIQKWILREKLKCRRMDDDRDGKLNLAEFSMYAYDGNYKSYAEFEPNVARVGTAEEKFLELDVNKDNFLSEEELIPMIPYLKPGELSYAK HYTSYLIHETDENGDGYLSIDEMLNHEYTFYGTFFQDDEDYDDEFHEEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27790			Calcium-binding EF hand family...		Potri.015G010300 [exp]	0	1
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Potri.019G013800 [exp]	1.00	0.7676
AT4G22300		SOBER1	SUPPRESSOR OF AVRBST-ELICITED ...		Potri.004G001701 [exp]	1.41	0.7073
AT1G34065		SAMC2	S-adenosylmethionine carrier 2...		Potri.002G063901 [exp]	4.58	0.6680
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G123001 [exp]	7.54	0.5438
AT1G61566		RALFL9	ralf-like 9 (.1)		Potri.018G007701 [exp]	8.48	0.6399
AT4G16447			unknown protein		Potri.011G086300 [exp]	10.67	0.6090
					Potri.013G104501 [exp]	11.66	0.5907
					Potri.001G054301 [exp]	15.49	0.5825
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Potri.003G218300 [exp]	18.89	0.5660
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.005G092950 [exp]	19.44	0.5373

Compare expression of checked genes

Potri.015G010300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.