Plant FIBer expression Database

Potri.015G010500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G017400
[exp]
65 / 2e-15 AT5G53486 40 / 1e-05 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.015G010500.1 pacid=42776159 polypeptide=Potri.015G010500.1.p locus=Potri.015G010500 ID=Potri.015G010500.1.v4.1 annot-version=v4.1
ATGGCGCCTACTCTTAGGATCAAGACCTTTCTTTTATTGTCCCTCTTGCTCCTTGCTCCCTTATCATCTTCGGGTTTGGTTGAAGGCTTCAAGGAAGGCA
TGCATCCACACAACTCATTTGTCAAGGATGGCATCCATATGATCAATGCAAGGAAGCTTTTGCTGGATATGCTGGATTATGGTGATGCAGGAGCTAACCA
TAAGCATGACCCCAGGGGGAAAGCTGTTGTTGTTGGTGGCAAGAGCCCTTGA
AA sequence
>Potri.015G010500.1 pacid=42776159 polypeptide=Potri.015G010500.1.p locus=Potri.015G010500 ID=Potri.015G010500.1.v4.1 annot-version=v4.1
MAPTLRIKTFLLLSLLLLAPLSSSGLVEGFKEGMHPHNSFVKDGIHMINARKLLLDMLDYGDAGANHKHDPRGKAVVVGGKSP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.015G010500
[exp]
0 1
AT3G07360 ATPUB9 ARABIDOPSIS THALIANA PLANT U-B... Potri.013G052200
[exp]
3.74 0.6425
AT1G54210 ATATG12, APG12,... AUTOPHAGY 12 A, AUTOPHAGY 12, ... Potri.003G064300
[exp]
10.00 0.6026
AT3G13650 Disease resistance-responsive ... Potri.001G023800
[exp]
12.68 0.6646
AT1G08250 AtADT6, ADT6 Arabidopsis thaliana arogenate... Potri.009G148800
[exp]
13.41 0.6492
AT2G39690 Protein of unknown function, D... Potri.010G202900
[exp]
18.49 0.6408
AT5G18170 GDH1 glutamate dehydrogenase 1 (.1) Potri.019G034800
[exp]
18.97 0.6409 Pt-GDH1.1
AT2G15220 Plant basic secretory protein ... Potri.001G299500
[exp]
22.47 0.6435
AT5G64700 nodulin MtN21 /EamA-like trans... Potri.011G148600
[exp]
24.14 0.6342
AT4G17220 ATMAP70-5 microtubule-associated protein... Potri.006G018000
[exp]
28.24 0.6490
AT3G47570 Leucine-rich repeat protein ki... Potri.005G030800
[exp]
34.32 0.5813 RGA.58

Potri.015G010500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.