Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PPH1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27800 509 / 0 TAP38, PPH1 PROTEIN PHOSPHATASE 1, thylakoid-associated phosphatase 38 (.1.2.3) AT1G43900 134 / 1e-35 Protein phosphatase 2C family protein (.1) AT3G51470 124 / 7e-32 Protein phosphatase 2C family protein (.1) AT2G25620 123 / 2e-31 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT5G53140 123 / 2e-31 Protein phosphatase 2C family protein (.1) AT2G33700 122 / 4e-31 Protein phosphatase 2C family protein (.1) AT5G10740 118 / 7e-30 Protein phosphatase 2C family protein (.1) AT3G62260 118 / 1e-29 Protein phosphatase 2C family protein (.1.2) AT5G24940 115 / 2e-28 Protein phosphatase 2C family protein (.1) AT1G18030 112 / 1e-27 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G115100 [exp] 128 / 1e-33 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1) Potri.005G186001 [exp] 122 / 4e-32 AT1G43900 422 / 4e-149 Protein phosphatase 2C family protein (.1) Potri.001G043000 [exp] 123 / 9e-32 AT4G31860 548 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.006G059600 [exp] 122 / 3e-31 AT2G25620 375 / 9e-129 DNA-binding protein phosphatase 1 (.1) Potri.002G074500 [exp] 118 / 2e-30 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1) Potri.007G058700 [exp] 119 / 5e-30 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.014G115500 [exp] 119 / 7e-30 AT3G62260 461 / 2e-162 Protein phosphatase 2C family protein (.1.2) Potri.012G002100 [exp] 118 / 8e-30 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 114 / 4e-29 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022384 [exp] 496 / 3e-175 AT4G27800 466 / 1e-163 PROTEIN PHOSPHATASE 1, thylakoid-associated phosphatase 38 (.1.2.3) Lus10005908 [exp] 472 / 9e-166 AT4G27800 426 / 1e-147 PROTEIN PHOSPHATASE 1, thylakoid-associated phosphatase 38 (.1.2.3) Lus10001682 [exp] 134 / 3e-35 AT2G25620 381 / 6e-131 DNA-binding protein phosphatase 1 (.1) Lus10014926 [exp] 120 / 5e-31 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10016030 [exp] 117 / 2e-29 AT2G33700 550 / 0.0 Protein phosphatase 2C family protein (.1) Lus10041072 [exp] 115 / 4e-29 AT1G07160 238 / 3e-76 Protein phosphatase 2C family protein (.1) Lus10030731 [exp] 116 / 7e-29 AT2G33700 553 / 0.0 Protein phosphatase 2C family protein (.1) Lus10013213 [exp] 116 / 9e-29 AT2G33700 541 / 0.0 Protein phosphatase 2C family protein (.1) Lus10019012 [exp] 115 / 9e-29 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10012244 [exp] 115 / 2e-28 AT2G33700 533 / 0.0 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.015G010600.2 pacid=42775150 polypeptide=Potri.015G010600.2.p locus=Potri.015G010600 ID=Potri.015G010600.2.v4.1 annot-version=v4.1 ATGGCATTGTTTAGGCCACAGTTGGAGAGATTCCTATCAACCAAACTCCATTGTGGCCACTCCAGTACCAAAACCCCCGCTAAAAACTTCTTTTTTGCTA CTAGGCCTAAAAGCCAGTGTTCTGCTATAGCAATAGATGCCCCATCTTCTTTAACTGATGTTGCTGGGATCCGGTGGGGTTCTGCAAGCTTGCAAGGCGC ACGTGAAGAGATGGAGGATGACATCATAATTCGATCAGATGGCCTTGAAGGATTCTCCTTTGCTGCTGTTTTTGATGGCCATGCTGGTTTCTCTTCTGTG AAGTTCCTCAGGGATGAGTTGTACAAGGAGTGTGTAGCTGCTTTACAAGGCGGGTTGCTATTGAATGGAAAAGATTTCAATGCTATTAGAAAAGCATTAG AAGAGGCTTTTGAAAGGGTTGATGCAAAATTGCTAGATTGGCTTGAGAAGGATGGTGTGCAAGACGAATCTGGTTCGACAGCGACTGCTATGTTCATTGG AAACGAAAAGCTAGTCATTTCGCACATTGGTGATTCATCTGTGGTCCTTTCTCGTTCTGGAAAAATGGAAGTGTTGACTGATGCTCATCGACCTTATGGA AGCAACAAAATCTCTCTTCAAGAAATCAAAAGAATCAGAGAAGCAGGTGGATGGATTGTCAATGGAAGGATTTGTGGAGACATAGCCGTATCTCGTGCTT TTGGTGACATGCGGTTCAAGACAAAAAAGAATGAGATGCTGGAGAAAGGAGTCAAGGAAGGGAGATGGTCTGAAAAATTTAGTTCTCGAGTACAATTCAA TGGGGACTTGGTCATTGCATCTCCAGAAGTTTACCAAATAGCATTTGGATCAGATGCAGAGTTTGTAATTCTAGCATCTGATGGTTTATGGGATTACATG AACAGCTTAGATGCAGCTGCTTTTGTCAGGAACCAACTTCAAAAACATGGAGATGTTCAGCTAGCTTGCGAAGAACTTGCACGGAAAGCTATTGACCGGC GGACACAAGACAATGTTAGCATTATCATTGCTGATTTAGGGCGGACAGACTGGCAAAATCTGCCTCTCCAGCAACAAAATGTTGTGCTTGAACTGGGCCA AGCTTTTGCTACCATTGGTATTGTCACACTTGGAATATGGATGTCATCCTTGTTTTCTTCATAA
AA sequence Show only first row Show all	>Potri.015G010600.2 pacid=42775150 polypeptide=Potri.015G010600.2.p locus=Potri.015G010600 ID=Potri.015G010600.2.v4.1 annot-version=v4.1 MALFRPQLERFLSTKLHCGHSSTKTPAKNFFFATRPKSQCSAIAIDAPSSLTDVAGIRWGSASLQGAREEMEDDIIIRSDGLEGFSFAAVFDGHAGFSSV KFLRDELYKECVAALQGGLLLNGKDFNAIRKALEEAFERVDAKLLDWLEKDGVQDESGSTATAMFIGNEKLVISHIGDSSVVLSRSGKMEVLTDAHRPYG SNKISLQEIKRIREAGGWIVNGRICGDIAVSRAFGDMRFKTKKNEMLEKGVKEGRWSEKFSSRVQFNGDLVIASPEVYQIAFGSDAEFVILASDGLWDYM NSLDAAAFVRNQLQKHGDVQLACEELARKAIDRRTQDNVSIIIADLGRTDWQNLPLQQQNVVLELGQAFATIGIVTLGIWMSSLFSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Potri.015G010600 [exp]	0	1	Pt-PPH1.1
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Potri.007G057200 [exp]	1.00	0.9880
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Potri.013G053100 [exp]	2.44	0.9818
AT1G56500			haloacid dehalogenase-like hyd...		Potri.013G007800 [exp]	3.87	0.9775
AT1G09340		CSP41B, CRB, HI...	heteroglycan-interacting prote...		Potri.013G006100 [exp]	4.24	0.9762
AT1G43670		FINS1, AtcFBP	FRUCTOSE INSENSITIVE 1, Arabid...		Potri.005G191400 [exp]	4.24	0.9679
AT1G73110			P-loop containing nucleoside t...		Potri.001G037300 [exp]	4.47	0.9660
AT4G12830			alpha/beta-Hydrolases superfam...		Potri.014G175700 [exp]	4.47	0.9773
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Potri.001G044000 [exp]	4.58	0.9757
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Potri.016G106900 [exp]	5.91	0.9763	FBP.1
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Potri.016G096600 [exp]	6.70	0.9754

Compare expression of checked genes

Potri.015G010600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.