Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24314 168 / 5e-54 PDE225, PTAC7 PIGMENT DEFECTIVE 225, plastid transcriptionally active7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041454 [exp] 137 / 3e-42 AT5G24314 150 / 2e-47 PIGMENT DEFECTIVE 225, plastid transcriptionally active7 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G010700.1 pacid=42776569 polypeptide=Potri.015G010700.1.p locus=Potri.015G010700 ID=Potri.015G010700.1.v4.1 annot-version=v4.1 ATGGCCGCCTCTGCTCTATCCTTTGCTTTCTCTTCACTTTCACCTCAAAAATCTTCACTTTGCTCGTTTCCAGAGAAATCCCAGGTAGTCTCAAAGTTGC AAAAAAACAGTAGCCGTGGTAGGCGAGTCTGGCGCCGGAGGAAATTGACTAAGGAAGATGATCTATTGCGATATAAATTGGAGCGAGTTCCTTTCCTTGA GGAGCAGGTTAGAAAGATTAAAGACGAAGGAAAGTTATTGACAATGGATATCCACAGATTGTTACTATCAGAGGATAACAGGTTTGATTTTGTGAATGAG ATTGCAGCTGAGGCCATAGAGTATGTTGAGAACAACAGAGATGACTACGGAGGAAAGAAAAAAGCCATTTTACATGTGCTTAGCAACCGTATGAACGATG CTGGGTATTCCCGTCCGGTGGCATATGAGGAATCCGACCCCTTCCTGCCAGGGCCTACTTATTTGAGGCAGGAGCTTGAATAG
AA sequence Show only first row Show all	>Potri.015G010700.1 pacid=42776569 polypeptide=Potri.015G010700.1.p locus=Potri.015G010700 ID=Potri.015G010700.1.v4.1 annot-version=v4.1 MAASALSFAFSSLSPQKSSLCSFPEKSQVVSKLQKNSSRGRRVWRRRKLTKEDDLLRYKLERVPFLEEQVRKIKDEGKLLTMDIHRLLLSEDNRFDFVNE IAAEAIEYVENNRDDYGGKKKAILHVLSNRMNDAGYSRPVAYEESDPFLPGPTYLRQELE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24314		PDE225, PTAC7	PIGMENT DEFECTIVE 225, plastid...		Potri.015G010700 [exp]	0	1
AT1G73885			unknown protein		Potri.015G053800 [exp]	4.79	0.9731
AT5G57170			Tautomerase/MIF superfamily pr...		Potri.006G075100 [exp]	5.65	0.9714
AT1G73885			unknown protein		Potri.015G054100 [exp]	9.59	0.9699
AT2G33450			Ribosomal L28 family (.1)		Potri.010G068500 [exp]	10.09	0.9703
AT2G31380	CO	STH	salt tolerance homologue (.1)		Potri.017G028300 [exp]	12.32	0.9517	Pt-STH.1
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Potri.001G074200 [exp]	12.72	0.9672
AT1G28140			unknown protein		Potri.001G100300 [exp]	13.22	0.9698
AT2G04700			ferredoxin thioredoxin reducta...		Potri.001G350900 [exp]	14.14	0.9642
AT5G16660			unknown protein		Potri.013G078100 [exp]	14.49	0.9530
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Potri.004G016900 [exp]	14.69	0.9624	Pt-LAF6.1

Compare expression of checked genes

Potri.015G010700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.