Plant FIBer expression Database

Potri.015G010800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G53080 579 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
AT4G10840 47 / 3e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
AT5G37590 46 / 6e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022387
[exp]
681 / 0 AT5G53080 536 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10005905
[exp]
646 / 0 AT5G53080 525 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10017304
[exp]
48 / 2e-05 AT4G10840 932 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF13374 TPR_10 Tetratricopeptide repeat
CL0020 TPR PF13424 TPR_12 Tetratricopeptide repeat
Representative CDS sequence
>Potri.015G010800.2 pacid=42775867 polypeptide=Potri.015G010800.2.p locus=Potri.015G010800 ID=Potri.015G010800.2.v4.1 annot-version=v4.1
ATGGCAGTTTCCCTCCTCCATCACCCTCCTTTAACCAACCAACGGATAACTCAAGCGTTTGTAGACTTGAATTCAAGGTCTTTGCAGAGAGGCATCACTT
GCTTCTCAATTTGTCTCCAGAAGCAGAAATGCAGCATCGAACTATACATGATACCCACTACAACAGTTGCTCGACACTGGATGTTGAAAACTTTTGCTTC
AGCTGGCTCATTAAATGCAGAAGTGGAATGTCAAGAAAATCAAATTTCCTCTGGTTTCTCAACTTCTAATGACTTCGGGAGGTCTAAAACAGTGGCTGAC
AGCTCAAGTAAACCCTCAGATGGTGTGAAAGATTTTGAGAGACAGTTGCAAGAGTTGTTTGATGAAGTCAAAATGATGATCAAGATGGGAAACAAAAATG
ATGCCATGGATCTACTTCAAGCAAATTATGAATTTGTCAAAGAGCAGATCAATGCAGGTTCTAGCGGCATTGAAGAAGCCGCTACTCTTGACATCATAGC
CTTGGGATACATGGCTATTGGAGACTTAAAGTCTGTTGGGTTTATCCTGAACAAGTTGGACGAAGTTGTTGAGCGTCTAACCGATGACGAACCTCTTCTG
GATTCAGTACTAATACATATGGGAAGCATGTATTCAGCTTTGGGGAAGTTTGAAAAATCCATGCTTGTATATCAAAGAGTTATTGCTATTCTAGAGAGAA
TACATGGGAAAGGCAGTGCTTTTCTTGTCTCACCATTGTTGGGGATGGCAAAAATTCTGGGTTCGATTGGAAAAGCTACCAAAGCGATAGAAGTCTACCA
ACGTGTGATAAGTATTCTGGAATCTAGCAGAGGAGCTGAAAGCAAAGATTTGGTAGTGCCTTTATCTGGTCTTGGCAATCTTTTGATCAAGGAAGGAAGA
GCCACAGATGCAGAAAGTCTTTTTAATAGAATTTTAAGCATATATAAGGAGTCATATGGTGAATATGATGGAAGATTTGGCATGGCTTTGTGTTCGGTAG
CCCATGTGAAGTGTGCAACAGGGAATGCAGAAGAAGCTATTAATTTATATAGAAAGGCTCTTCAAGTCATCAAGGATGCAGACTACATGGCTGTAGATGA
CAGTATCATGGAGAGGATGAGGATAGATTTGGCTGAATTGCTTCACGTTGTAGGAAGAGGAAACGAAGGCCGAGAGCTACTAGAAGAATGCTTGTTGATC
ACTGAAAAGTATAAAGGAAAAGATCATCCAAGCTCAGTTACACACCTTATTAATCTTGCAACCTCCTACTCTCAATCAAAGAACTATGTCCAGGCTGAGC
GCTTGTTGAGGACAAGTTTGGAGATTATGATGAAAAGTGTGAGACCGGATGATTCATCCATCACCTTCCCGATGCTGCACCTCGCAGTGACTCTCTACCG
TTTGAATCAGGATGAAGAAGCGGAGCAACTCACACTAGAGGTTCTGCACATTCGTGAGAAGGCATTTGGAAAAGATTCTCTTCCTGTCGGGGAGGCTCTG
GACTGTCTGGTTTCCATCCAGACCAGATTAGGGAAGCCAGAAGCTGAGTTGTTGGATCTTCTAAAACAAGTTCTAAAGATTCAAGAAAAAGAGTTTGGCT
ATGAGAGTGAAGAGGTTATGAGAACCCTAAAGAAAATTGTATTCTACTTGGATAAAACAGGAAGGAAGGATGAGAAATTTTCCATGCAGAAAAGATTATC
TGTGCTCAGGATGAAATATAATCAAATGATGCAATATTAA
AA sequence
>Potri.015G010800.2 pacid=42775867 polypeptide=Potri.015G010800.2.p locus=Potri.015G010800 ID=Potri.015G010800.2.v4.1 annot-version=v4.1
MAVSLLHHPPLTNQRITQAFVDLNSRSLQRGITCFSICLQKQKCSIELYMIPTTTVARHWMLKTFASAGSLNAEVECQENQISSGFSTSNDFGRSKTVAD
SSSKPSDGVKDFERQLQELFDEVKMMIKMGNKNDAMDLLQANYEFVKEQINAGSSGIEEAATLDIIALGYMAIGDLKSVGFILNKLDEVVERLTDDEPLL
DSVLIHMGSMYSALGKFEKSMLVYQRVIAILERIHGKGSAFLVSPLLGMAKILGSIGKATKAIEVYQRVISILESSRGAESKDLVVPLSGLGNLLIKEGR
ATDAESLFNRILSIYKESYGEYDGRFGMALCSVAHVKCATGNAEEAINLYRKALQVIKDADYMAVDDSIMERMRIDLAELLHVVGRGNEGRELLEECLLI
TEKYKGKDHPSSVTHLINLATSYSQSKNYVQAERLLRTSLEIMMKSVRPDDSSITFPMLHLAVTLYRLNQDEEAEQLTLEVLHIREKAFGKDSLPVGEAL
DCLVSIQTRLGKPEAELLDLLKQVLKIQEKEFGYESEEVMRTLKKIVFYLDKTGRKDEKFSMQKRLSVLRMKYNQMMQY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G53080 Tetratricopeptide repeat (TPR)... Potri.015G010800
[exp]
0 1
AT2G04030 Hsp88.1, AtHsp9... HEAT SHOCK PROTEIN 88.1, EMBRY... Potri.010G136800
[exp]
2.82 0.9753
AT5G66055 EMB16, EMB2036,... EMBRYO DEFECTIVE 2036, EMBRYO ... Potri.007G060400
[exp]
3.31 0.9758
AT3G57430 OTP84 ORGANELLE TRANSCRIPT PROCESSIN... Potri.001G075800
[exp]
3.46 0.9721
AT1G11870 AtSRS, OVA7 ovule abortion 7, Seryl-tRNA s... Potri.002G100300
[exp]
5.29 0.9690
AT3G58140 phenylalanyl-tRNA synthetase c... Potri.013G105200
[exp]
5.47 0.9724
AT4G38490 unknown protein Potri.004G177800
[exp]
7.21 0.9489
AT1G09900 Pentatricopeptide repeat (PPR-... Potri.002G109500
[exp]
9.48 0.9707
AT4G34730 ribosome-binding factor A fami... Potri.004G164200
[exp]
9.48 0.9675
AT5G66470 RNA binding;GTP binding (.1) Potri.007G021900
[exp]
9.79 0.9499
AT3G23020 Tetratricopeptide repeat (TPR)... Potri.010G078900
[exp]
10.09 0.9596

Potri.015G010800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.