Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26760 322 / 7e-103 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005906 [exp] 438 / 5e-145 AT5G26760 320 / 6e-103 unknown protein Lus10022386 [exp] 407 / 7e-131 AT5G26760 279 / 2e-85 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04181 [poplar] [flax] RPAP2_Rtr1 Rtr1/RPAP2 family
Representative CDS sequence Show only first row Show all	>Potri.015G010900.7 pacid=42775019 polypeptide=Potri.015G010900.7.p locus=Potri.015G010900 ID=Potri.015G010900.7.v4.1 annot-version=v4.1 ATGGCGAAAGATCAATCAACTGTTGTTAAGGATACTATTTACAAATTACAACTTTCTCTTCTCGACGGCATCCAAAATGAGGATCAGTTATTTGCAGCTG GATCTATAATGTCGCACAGTGATTATGAAGATGTTGTTACTGAACGAACGATAGCGAACCTCTGTGGTTACCCTCTCTGTGGCAATTCTTTGCCATCTGA TCGCCCTCAAAAGGGCCGTTATCGCATTTCTTTGAAGGAGCATAAAGTTTATGATCTACATGAGACGTACATGTATTGCTCTTCTAGTTGTGTTATTAAT AGTCGAACTTTTTCTGGGAGCTTGCAAGAAGAGAGATGCTTGGTTTTGAATCCAGCAAAACTTAATGAGGTTTTGATGTTGTTTGATAATTTTAGTTTGG GTTCTGAGGGTAGTCTGGGGAAGAATGGGGATTTGGGTTTTTCAAATTTGAAGATCGAGGAGAAAACAGAAAAAGTTGAGGGAGAGGTTTCTTTTGAACA ATGGATTGGTCCTTCAAATGCAATTGAAGGGTATGTTCCACAACGGGATCGTAATTCAAAGTCCTTACCATTGAAAAATCACAAAGAAGGGCTAGAAGAA GATTTTATCATCGATGACATGGATTTCACAAGCTCCATTATCACTCAAGATGAATATAGCATTTCAAAAACTCCCTCAGGCTTGACAGACACCAACACTG ATAAAAAAACTCAGAAACCAAAAGCAAAAGGATCTCATAAAGGCTCTAAGGGATCAAAAGCTAAAGGTACTAAACAAAGTAGTAAACAAGAATCTTTCAT CAATGACATGAACTTCACAAGCACCATCATTATCACTCAAGATGAGTATAGCATTTCAAAAAGTCCCTCAGGTTTGGCAGGCACTACTTCCAAAACAAAA ATACAGAAACAGAAAGAAAAGGTATCTCAGAAAAGCTCTGAGAATCAATCTTCTGCTACTAGAAAGGTTGGTTCTAGTAAGACATCAAGGAAGGTGAAAG AAGATAGAAGTAAAGTAGCCATAAAAGATGAGCTTAGCAGTCAAGATCTGTCTTCACCTTTTGATTCCTGTCAAACCAGTTCCATTACAATTACTGCTGA AGCTAAAGAAAAATCTGTGTCTGAAAAAGCAGCTAAACCGGTTGAATCATCACTCAAGCCCTCTCTTAAAACTTCTGGTGCGAAGCAATTAACTCGCTCT GTTACTTGGGCTGATGAGAAAGTTGGTAGTTCTGGAAGTAGAGATCTTTGCGAGGTTAGGGGAATGGAAGATACAAAAGCAGGTCCTGAGATTGTAGACA ATATAGACAAGAGAGATGATGGTTATGTATCAAAATTCGAATCAGCTGAAGCATGTGCTAAAGCTTTGAGCCAGGCTGCTGAAGCTGTTGCATCTGGAGA TGCTGATGCCAGTAATGCTCTGTCTGAAGCTGGACTCGTCATATTACCTCAACCGCATGATTTGGATCAAGGGGATCCCATGGAGGATGTTGATGTGCTT GACGAAGAATCCTCAACTATTAAGTGGCCAGGAAAGCCTGGGATTCCACAATCTGAATGCTTTGATCCCGAGAACTCATGGTATGATGCTCCTCCTGAAG GTTTCAGTTTGGAGTTATCCTCTTTCGCGACAATATGGATGGCTCTGTTTGCATGGGTCACATCATCCTCTTTGGCATATGTATACGGCAAAGATGAAAG TTCCCATGAGGAATACTTGATGGTTAATGGGAGGGAGTACCCTCGGAAGATTGTCTTGGGAGATGGTCGCTCCTTTGAAATCCAGCAAACTATTGAGGGT TGTCTTGGTCGGGCTTTCCCTGTTGTTGTTGCTGATCTCAGGCTACCAATACCTATATCTACATTGGAGCAAGGAGCGGCAAACTTGTTGGGTACAATGT CCTTTGTTGATGCAGTTCCAGCATTCAGAATGAAACAGTGGCAAGTCATAGCGCTTCTCTTCATTGAAGCTCTCTCTGTATGCAGGATCCCAGCACTCAT TTCATACATGGATAATAGGAGAATGGTGATTCAGAAGGTGGTAGATGGTGTCCGCATGAGTGCAGAAGAGTATGAGGTCATGAAGGATCTCATGATACCT CTTGGCCGAGCACCTCAGTTTTCGCCTCAGAGTGGAGCATAG
AA sequence Show only first row Show all	>Potri.015G010900.7 pacid=42775019 polypeptide=Potri.015G010900.7.p locus=Potri.015G010900 ID=Potri.015G010900.7.v4.1 annot-version=v4.1 MAKDQSTVVKDTIYKLQLSLLDGIQNEDQLFAAGSIMSHSDYEDVVTERTIANLCGYPLCGNSLPSDRPQKGRYRISLKEHKVYDLHETYMYCSSSCVIN SRTFSGSLQEERCLVLNPAKLNEVLMLFDNFSLGSEGSLGKNGDLGFSNLKIEEKTEKVEGEVSFEQWIGPSNAIEGYVPQRDRNSKSLPLKNHKEGLEE DFIIDDMDFTSSIITQDEYSISKTPSGLTDTNTDKKTQKPKAKGSHKGSKGSKAKGTKQSSKQESFINDMNFTSTIIITQDEYSISKSPSGLAGTTSKTK IQKQKEKVSQKSSENQSSATRKVGSSKTSRKVKEDRSKVAIKDELSSQDLSSPFDSCQTSSITITAEAKEKSVSEKAAKPVESSLKPSLKTSGAKQLTRS VTWADEKVGSSGSRDLCEVRGMEDTKAGPEIVDNIDKRDDGYVSKFESAEACAKALSQAAEAVASGDADASNALSEAGLVILPQPHDLDQGDPMEDVDVL DEESSTIKWPGKPGIPQSECFDPENSWYDAPPEGFSLELSSFATIWMALFAWVTSSSLAYVYGKDESSHEEYLMVNGREYPRKIVLGDGRSFEIQQTIEG CLGRAFPVVVADLRLPIPISTLEQGAANLLGTMSFVDAVPAFRMKQWQVIALLFIEALSVCRIPALISYMDNRRMVIQKVVDGVRMSAEEYEVMKDLMIP LGRAPQFSPQSGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26760			unknown protein		Potri.015G010900 [exp]	0	1
AT5G44090			Calcium-binding EF-hand family...		Potri.002G035800 [exp]	1.00	0.8926
AT5G59980			Polymerase/histidinol phosphat...		Potri.009G025800 [exp]	2.00	0.8885
AT3G02890			RING/FYVE/PHD zinc finger supe...		Potri.003G091000 [exp]	5.00	0.8261
AT1G09730			Cysteine proteinases superfami...		Potri.017G044000 [exp]	5.19	0.8819
AT4G10710		SPT16	global transcription factor C ...		Potri.013G004500 [exp]	6.00	0.8786	GTC903
AT5G53770			Nucleotidyltransferase family ...		Potri.001G400800 [exp]	8.94	0.8493
AT2G47820			unknown protein		Potri.010G023900 [exp]	9.48	0.8145
AT2G03140			alpha/beta-Hydrolases superfam...		Potri.006G136900 [exp]	11.83	0.8517
AT2G29190		APUM2	pumilio 2 (.1.2)		Potri.001G243400 [exp]	12.00	0.8430
AT2G40360			Transducin/WD40 repeat-like su...		Potri.003G009600 [exp]	13.63	0.8600

Compare expression of checked genes

Potri.015G010900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.