Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17490 77 / 1e-15 F-box and associated interaction domains-containing protein (.1) AT3G06240 67 / 3e-12 F-box family protein (.1) AT4G12560 60 / 7e-10 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT1G46984 56 / 1e-08 F-box family protein (.1) AT3G07870 55 / 3e-08 F-box and associated interaction domains-containing protein (.1) AT1G55070 54 / 5e-08 F-box and associated interaction domains-containing protein (.1) AT1G32600 52 / 1e-07 F-box associated ubiquitination effector family protein (.1) AT3G57590 52 / 2e-07 F-box and associated interaction domains-containing protein (.1) AT5G47300 52 / 3e-07 F-box and associated interaction domains-containing protein (.1) AT5G50220 48 / 5e-06 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G007900 [exp] 142 / 3e-39 AT2G04920 63 / 1e-10 F-box and associated interaction domains-containing protein (.1) Potri.006G013000 [exp] 87 / 8e-19 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.015G013800 [exp] 82 / 2e-17 AT4G12560 105 / 7e-25 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G014300 [exp] 81 / 8e-17 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.015G013500 [exp] 76 / 3e-15 AT4G10190 70 / 4e-13 F-box and associated interaction domains-containing protein (.1) Potri.011G121200 [exp] 72 / 4e-14 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G014700 [exp] 72 / 6e-14 AT1G12170 66 / 1e-11 F-box family protein (.1) Potri.017G058000 [exp] 64 / 2e-11 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.002G223000 [exp] 63 / 8e-11 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006687 [exp] 74 / 1e-14 AT4G12560 81 / 5e-17 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10007848 [exp] 62 / 1e-10 AT3G10430 73 / 5e-14 F-box and associated interaction domains-containing protein (.1) Lus10018106 [exp] 62 / 2e-10 AT3G06240 95 / 3e-21 F-box family protein (.1) Lus10013873 [exp] 62 / 2e-10 AT3G06240 104 / 2e-24 F-box family protein (.1) Lus10037892 [exp] 61 / 3e-10 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10038606 [exp] 61 / 4e-10 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10038603 [exp] 60 / 9e-10 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10031020 [exp] 59 / 1e-09 AT3G10430 88 / 3e-19 F-box and associated interaction domains-containing protein (.1) Lus10026587 [exp] 59 / 2e-09 AT3G06240 104 / 3e-24 F-box family protein (.1) Lus10039024 [exp] 58 / 3e-09 AT4G12560 333 / 3e-111 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [poplar] [flax] FBA PF07734 [poplar] [flax] FBA_1 F-box associated
Representative CDS sequence Show only first row Show all	>Potri.015G011000.2 pacid=42774753 polypeptide=Potri.015G011000.2.p locus=Potri.015G011000 ID=Potri.015G011000.2.v4.1 annot-version=v4.1 ATGCTCACACAGCGGCGAGAATTATATAGCATATCAGTGCTTCCCGGAGGAATAAATAGAGTTGATGATCGCAGCATGCCATTCGCACTGGAAGCGGGTA AATATGCAGCAGAAATTGTGGGTTCTAGCAATGGTTTAGTTTGTTTAAGTATCCGTTCAAAGATATCTAATGATCTTAACGCTCATATATTATGGAATCC AGCAACAAGGCAATACCGAGAGTTACCTCCTAACAGGATTTGTTACAGTCAAGCTCAAGGGTTTGGTTTCCATCACGGTATAAACGACTACAAACTGCTC CAAGTTGCTTACAGAAAGAATGGCCAGCAGGAAGCTAAGGTTCTTGCATTGAGCACAGGTTCTTGGAGAAAGGTGGAGGACACTCTTCCTTCATATGATT ACGGTATTGCAAAACCGGTGGTTGTTAAAGGAGTTTGGTATCACATGGCAACAGCTGCTCGAGAAACACCATTTATTATAAGGTTTGACATGGGCGACGA CACCTTCTCCAAGGTGAAAACTGCACCTATACCTTATCATTCCTCTCCTGAATATCTCGTTAAGAAAGTGAAGTTGATGGAGTACAAAGAATTGCCTGCA ATTTGCGTATTCGAATATAATTACTGGATCCCATATCCTAGTTTATCTTTCAAGATTGATATATGGTTAATGAACAACGAGCAGTCTTGGACAAAGGTAT TGACATGTAGTCAGAATTCCGTTCCCATTTCTGATGTTGGCTTGCTGCCTTTAGGGTTCTGGGTTGATGAAGAAAGTATAATCTCGGAGAACTACAAGAG GGATGGCTTGAGCTTGTTTAATCTCTCGAATAAGCAATCGAAAGTGGTTGTGGTAGATGAAGCCAAAAGGTTTGGAAGTGCTCATAGTTATGTGGAGAGC ATGGTTTCAGTCTACCCTACCAGAAGTCAAGATAGGGACTCCACAAATTAA
AA sequence Show only first row Show all	>Potri.015G011000.2 pacid=42774753 polypeptide=Potri.015G011000.2.p locus=Potri.015G011000 ID=Potri.015G011000.2.v4.1 annot-version=v4.1 MLTQRRELYSISVLPGGINRVDDRSMPFALEAGKYAAEIVGSSNGLVCLSIRSKISNDLNAHILWNPATRQYRELPPNRICYSQAQGFGFHHGINDYKLL QVAYRKNGQQEAKVLALSTGSWRKVEDTLPSYDYGIAKPVVVKGVWYHMATAARETPFIIRFDMGDDTFSKVKTAPIPYHSSPEYLVKKVKLMEYKELPA ICVFEYNYWIPYPSLSFKIDIWLMNNEQSWTKVLTCSQNSVPISDVGLLPLGFWVDEESIISENYKRDGLSLFNLSNKQSKVVVVDEAKRFGSAHSYVES MVSVYPTRSQDRDSTN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17490			F-box and associated interacti...		Potri.015G011000 [exp]	0	1
AT4G01200			Calcium-dependent lipid-bindin...		Potri.002G166400 [exp]	3.31	0.8865
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Potri.001G466066 [exp]	3.46	0.8673
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Potri.002G117800 [exp]	11.22	0.8344
AT5G63830			HIT-type Zinc finger family pr...		Potri.003G145100 [exp]	19.51	0.8606
AT5G53000		TAP46	2A phosphatase associated prot...		Potri.012G016500 [exp]	23.74	0.8564
AT3G03750		SUVR3, SDG20	SET domain protein 20 (.1.2)		Potri.013G064600 [exp]	24.04	0.7934	SDG935
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.014G106200 [exp]	27.56	0.7884	Pt-MTP1.1
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Potri.003G222400 [exp]	28.63	0.8057	Pt-LEN1.1
AT5G24240			Phosphatidylinositol 3- and 4-...		Potri.012G014600 [exp]	31.17	0.7724
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Potri.009G081500 [exp]	33.76	0.8348

Compare expression of checked genes

Potri.015G011000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.