Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53060 699 / 0 RNA-binding KH domain-containing protein (.1.2) AT5G15270 192 / 4e-53 RNA-binding KH domain-containing protein (.1.2) AT1G51580 174 / 2e-46 RNA-binding KH domain-containing protein (.1) AT4G18375 144 / 5e-36 RNA-binding KH domain-containing protein (.1.2) AT2G22600 130 / 1e-31 RNA-binding KH domain-containing protein (.1) AT1G14170 126 / 1e-30 RNA-binding KH domain-containing protein (.1.2.3) AT5G46190 126 / 4e-30 RNA-binding KH domain-containing protein (.1) AT5G64390 124 / 2e-29 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT3G04610 98 / 3e-21 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1) AT5G09560 87 / 1e-17 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G017200 [exp] 1059 / 0 AT5G53060 656 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.002G112200 [exp] 241 / 4e-70 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.010G251700 [exp] 193 / 6e-53 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1) Potri.017G085500 [exp] 189 / 4e-52 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.004G123400 [exp] 187 / 2e-51 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G114400 [exp] 189 / 7e-51 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2) Potri.004G066100 [exp] 164 / 6e-43 AT4G18375 558 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.007G116300 [exp] 162 / 2e-41 AT5G64390 225 / 2e-62 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.017G042500 [exp] 158 / 3e-40 AT5G64390 345 / 1e-106 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022390 [exp] 791 / 0 AT5G53060 692 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10005915 [exp] 739 / 0 AT5G53060 599 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10007236 [exp] 204 / 7e-56 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10028237 [exp] 197 / 6e-54 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10005232 [exp] 187 / 4e-51 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10030689 [exp] 186 / 4e-51 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10036767 [exp] 171 / 2e-45 AT5G15270 483 / 2e-165 RNA-binding KH domain-containing protein (.1.2) Lus10023300 [exp] 168 / 4e-44 AT5G46190 643 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10037163 [exp] 162 / 7e-42 AT5G15270 491 / 1e-167 RNA-binding KH domain-containing protein (.1.2) Lus10038509 [exp] 160 / 2e-41 AT5G46190 653 / 0.0 RNA-binding KH domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Potri.015G011100.1 pacid=42775537 polypeptide=Potri.015G011100.1.p locus=Potri.015G011100 ID=Potri.015G011100.1.v4.1 annot-version=v4.1 ATGGAGAGATCTAGATCCAAGAGGAACTACTACTATGACCATCAAGATTATGACAATGACAACCTCAACAACAACAACAACAACAACATGGTTAGGACCA AACCCAGATACAACAACAACAACAATTATTACCGTCAACGTGGACAAGGAGGCAATAACATGTTCAACAACAACAACAACAGGTTTTCAAGAACCCAACA GCAGCAGCAACCGCCGCAGCAGCAACAAGACCCATCATCGACATTAATGGTGACAACGAGTTACAGAATTTTATGTCATGATATGAAAGCAGGGGGGGTG ATTGGTAAGTCGGGGAGCATAATCAAGTCCATAAGGCAACACACGGGAGCGTGGATTAATGTTCATGAGTTGATTCCTGGTGATGAGGAGAGGATAATTG AGATTTCAGATACGCGTAGGAGAGACCCAGAAGGGAGAATGCCTTCGTTTTCGCCAGCGCAAGAGGCGCTTTTCTTGATACATGATAGGATTCTTGAGAA TGATTTGCAGTATGGTGTGGTGAGTAGTGGTGCTGGTGGGTTTGAGGAGGACGAGTATGTGGGGAGAGGAGGGAATAGAGTGGCTACCAGATTGGTTGTG TCAAGAATGCATGTGGGGTGTTTGTTAGGGAAAGGAGGGAAGATTATTGAGCAGATGAGGATGGAAACAAAGACCCAGATTAGGATTTTGCCTAGAGACC ATACCTTGCCAAGATGTGTTTCCGTGTCTGAGGAGATTGTTCAGGTTATAGGTGATGTCAATGCTGTGAAAAATGCTGTCGCTATTATTTCATCAAGATT GAGGGAGAGTCAGCATCGTGACCGCAGTCATTTTCATGGACGAGTACAGTCACCAGAACGGTTTTTGGATGACGATTATGTTCCTCACATGAATACACGT CGTTCATCGATGGATGGACCACCCTCTTTCGGATCACGATTATCTGGCCCCAACTATAGAAACAATAACTATTCCTCACGAGCACCTGGTCTTCCTGTTG ACGCTGGGGCAGATCCCAACGCTGACAGTGCACAGCCCTTTTATGTTGAGGACCTTGTGTTTCGAATTCTTTGTCCAATTGACAAAGTTAATAGAGTTGT TGGAGAATCTGATGGCTTAGTGGACTTGCTTCAAAATGAAATAGGTGTGGATGTTAAGGTTGCTGATCCTGTGTCTGGGTCTGATGAACAGATAATCACC ATCTGCTCTGAAGAGGGTCCTGATGATGAGTTGTTTCCTGCTCAAGAAGCTTTGCTGCACATTCAAACACGCATTGTTGATCTTGTTGCAGATAAAGACA ACATAATAACAACCAGGTTACTTGTCCCATCTAGTGAGATTGGCTGTTTAGAGGGAAGAGATGGCTCCTTATCTGAGATGGAAAGTTTAACTGGTGCAAC GATAGAGATCCTGCCAAAGGAAATGCTTCCGACATATCTATCAGGGACTGATGAGCTTGTACAGATTCAAGGGGAAGTAAAGGCAGCTCGTGATGCTCTT GTTGAAGTGACGTCAAGACTTCGTAGTTACTTATACAAGGATGTCTTCCAGAAAGACCTGCCACCAACCGTGTCCGCACCAGGCCCTGCTGGGACTGCTG GAGGATTGCAGGCAGCGTCTTCAAATAACCCAACTCCAGCTCGTGAAGGTCACAGTGGTGGTGATCCTCCTGCAACCTATCAGAATGTGCAATCTGCTTC AACACCACAGCCATCGAAGGATGCTAGAGGATCTAGTGCTGAAACAGTTAAGCAGAATGAAAGCGAACACCGTGAAGATTTGCCTCCTCCTACAATGAAT AGAATCCCTGTAACACTTGTTACTAGGAGTATACTTGAAGTTGTCATACCAGAGCCTGCAGTCCCCAAGCTCATTACGAAATCAAAAAACAAGCTTGCAC AGATTAGTGAGTTATCTGGAGCCAACGTAACCCTTGTTGAAGATAGACCGGATGTGACAGAAAAGATCATACAAATATCTGGAACCCCGGAGCAGGCAGA GAGAGCACAGAGCTTGCTTCAAGGCTTTATTTTAAGCATACAAGAAGATGGACCTTAG
AA sequence Show only first row Show all	>Potri.015G011100.1 pacid=42775537 polypeptide=Potri.015G011100.1.p locus=Potri.015G011100 ID=Potri.015G011100.1.v4.1 annot-version=v4.1 MERSRSKRNYYYDHQDYDNDNLNNNNNNNMVRTKPRYNNNNNYYRQRGQGGNNMFNNNNNRFSRTQQQQQPPQQQQDPSSTLMVTTSYRILCHDMKAGGV IGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDRILENDLQYGVVSSGAGGFEEDEYVGRGGNRVATRLVV SRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHTLPRCVSVSEEIVQVIGDVNAVKNAVAIISSRLRESQHRDRSHFHGRVQSPERFLDDDYVPHMNTR RSSMDGPPSFGSRLSGPNYRNNNYSSRAPGLPVDAGADPNADSAQPFYVEDLVFRILCPIDKVNRVVGESDGLVDLLQNEIGVDVKVADPVSGSDEQIIT ICSEEGPDDELFPAQEALLHIQTRIVDLVADKDNIITTRLLVPSSEIGCLEGRDGSLSEMESLTGATIEILPKEMLPTYLSGTDELVQIQGEVKAARDAL VEVTSRLRSYLYKDVFQKDLPPTVSAPGPAGTAGGLQAASSNNPTPAREGHSGGDPPATYQNVQSASTPQPSKDARGSSAETVKQNESEHREDLPPPTMN RIPVTLVTRSILEVVIPEPAVPKLITKSKNKLAQISELSGANVTLVEDRPDVTEKIIQISGTPEQAERAQSLLQGFILSIQEDGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53060			RNA-binding KH domain-containi...		Potri.015G011100 [exp]	0	1
AT1G33240	Trihelix	AT-GTL2, AT-GTL...	GT2-LIKE 1, GT-2-like 1 (.1)		Potri.001G454500 [exp]	1.00	0.8650
AT5G17510			unknown protein		Potri.019G042800 [exp]	7.21	0.7848
AT1G33240	Trihelix	AT-GTL2, AT-GTL...	GT2-LIKE 1, GT-2-like 1 (.1)		Potri.011G147400 [exp]	12.44	0.8128
AT2G46200			unknown protein		Potri.014G091400 [exp]	12.60	0.8160
AT4G37190			unknown protein		Potri.001G361900 [exp]	14.89	0.7626
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.005G186900 [exp]	16.06	0.8226
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Potri.015G142900 [exp]	17.32	0.8156
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Potri.010G091200 [exp]	19.59	0.8021
AT3G14010		CID4	CTC-interacting domain 4 (.1.2...		Potri.001G171100 [exp]	23.95	0.8001
AT2G30140			UDP-Glycosyltransferase superf...		Potri.009G077500 [exp]	27.87	0.7762

Compare expression of checked genes

Potri.015G011100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.