Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) AT5G02920 66 / 3e-12 F-box/RNI-like superfamily protein (.1) AT5G03100 66 / 5e-12 F-box/RNI-like superfamily protein (.1) AT1G16930 64 / 5e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G53840 64 / 5e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G02930 64 / 7e-11 F-box/RNI-like superfamily protein (.1) AT1G66310 63 / 1e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G02910 62 / 1e-10 F-box/RNI-like superfamily protein (.1.2) AT1G60400 61 / 4e-10 F-box/RNI-like superfamily protein (.1) AT5G44950 61 / 4e-10 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 258 / 1e-83 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 153 / 3e-43 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G002001 [exp] 148 / 6e-42 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G104200 [exp] 140 / 3e-38 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 138 / 4e-37 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 134 / 4e-36 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G024200 [exp] 76 / 8e-15 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024300 [exp] 73 / 5e-14 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.001G322900 [exp] 60 / 1e-09 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024696 [exp] 134 / 1e-35 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10002239 [exp] 127 / 3e-33 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1) Lus10029357 [exp] 126 / 1e-32 AT3G28410 79 / 1e-15 F-box/RNI-like superfamily protein (.1) Lus10020748 [exp] 122 / 9e-32 AT3G28410 73 / 4e-14 F-box/RNI-like superfamily protein (.1) Lus10029586 [exp] 122 / 2e-31 AT3G18150 78 / 2e-15 RNI-like superfamily protein (.1) Lus10032255 [exp] 121 / 3e-31 AT5G02930 85 / 6e-18 F-box/RNI-like superfamily protein (.1) Lus10020292 [exp] 121 / 4e-31 AT1G60410 76 / 9e-15 F-box family protein (.1) Lus10024695 [exp] 119 / 1e-30 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10007058 [exp] 116 / 3e-29 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10026190 [exp] 114 / 2e-28 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.015G011200.1 pacid=42775091 polypeptide=Potri.015G011200.1.p locus=Potri.015G011200 ID=Potri.015G011200.1.v4.1 annot-version=v4.1 ATGGAAGACAGAGAAGCTGGATTACAAGACAGATTGAGCGATCTACCCGACTACATAATTCACGAAATCCTTTGTTTCCTCGAGATTAATCAAGCGATCC GAACTTCTGTCTTGTCCGAAAGATGGAAAAACTTGTGGGCTTCTGTTCCAGACCTGAATTTCAACAGCAAAAGTTTTACAGAACAAACGTTTCCTAAGTT TCTCCGAAGAGTTATGTCCAAACGGGAAGATTGCAACGTTCGGAGACTTGACATGTTTGCCCATTTGCCCATTCGTCTCTCATCAATGGAGGGTTTGATA AATTACGCAGTGGCTCATCAGGTTGAGGATTTTCGGTTTGTTTCTGATGATGTCCAGCCTGTTTCTTTACCAGCATGTGGTTCCTTGAAGACCCTTTTCT TATCTCGATGTAAGTTTGGTGATTTGCTGACATCTTTTGGTTTCGGTTTTGTTAATCTGACCTCGTTGGACTTGTATGTGTGTTGGTTTTGTTATTCTGA GAATGATTTTGGTGACCCTTTTGCTAGTTGTCGGAATTTGAGGAGGTTATGCCTCCGTTATTGTCGGTTTCCATCTTTGAAAAGGTTGAAAATTACTGGG TTTCAGCTGGTTAGCTTAGAAATTCAAGGGTTCGGCTATGGTGATCGAGGGTTACAAGAAGGTTGTGCGGTTGAGATTTTTGCGCCGAATCTGTTGTCTT TTGTGTACAAATTCTCCAAACCAGTGGATTTCTGTGGGCTTCATTTTCCATCTCTTGATTATGTTGAGGTCCATGTTTGGCAACATGGTACTGATGAGGC TACTGATCATGACAAAAGAAGGGCCAGTCTGTTCTTGATGAGTATGTTTGAAGGCTTTGGGAATGCACAATCTGTCAAGTTATATTGCGAAACCATTCAG GTTCTTGATTTGGTTGATGGATTGCTAGAACAACAACCTTCTCCCTTTAAAAGATTGAAGAAAGTAGATGTGCAATGTAATCGTGAATCATTCAAGGTAC CTGCTCATGTGACAAACTACTTACTCGCTGGCACTATTGGGCAGGAACTACATCTAGAGGTGCCAACCTGA
AA sequence Show only first row Show all	>Potri.015G011200.1 pacid=42775091 polypeptide=Potri.015G011200.1.p locus=Potri.015G011200 ID=Potri.015G011200.1.v4.1 annot-version=v4.1 MEDREAGLQDRLSDLPDYIIHEILCFLEINQAIRTSVLSERWKNLWASVPDLNFNSKSFTEQTFPKFLRRVMSKREDCNVRRLDMFAHLPIRLSSMEGLI NYAVAHQVEDFRFVSDDVQPVSLPACGSLKTLFLSRCKFGDLLTSFGFGFVNLTSLDLYVCWFCYSENDFGDPFASCRNLRRLCLRYCRFPSLKRLKITG FQLVSLEIQGFGYGDRGLQEGCAVEIFAPNLLSFVYKFSKPVDFCGLHFPSLDYVEVHVWQHGTDEATDHDKRRASLFLMSMFEGFGNAQSVKLYCETIQ VLDLVDGLLEQQPSPFKRLKKVDVQCNRESFKVPAHVTNYLLAGTIGQELHLEVPT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03220			Protein with RNI-like/FBD-like...		Potri.015G011200 [exp]	0	1
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Potri.016G082900 [exp]	4.89	0.7908
AT3G43230			RING/FYVE/PHD-type zinc finger...		Potri.018G064200 [exp]	9.16	0.7852
AT5G19830			Peptidyl-tRNA hydrolase family...		Potri.001G005000 [exp]	11.61	0.7738
AT5G63440			Protein of unknown function (D...		Potri.012G096500 [exp]	14.14	0.7406
AT2G17520		ATIRE1-2, IRE1A	ARABIDOPSIS THALIANA INOSITOL ...		Potri.007G059000 [exp]	16.00	0.7704
AT3G26000			Ribonuclease inhibitor (.1)		Potri.010G054600 [exp]	16.06	0.7661
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Potri.010G010448 [exp]	18.54	0.7629
AT5G09630			LisH/CRA/RING-U-box domains-co...		Potri.001G286300 [exp]	19.77	0.7518
AT4G14103			F-box/RNI-like superfamily pro...		Potri.001G395000 [exp]	20.19	0.7591
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Potri.005G192300 [exp]	20.49	0.7691

Compare expression of checked genes

Potri.015G011200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.