Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53040 137 / 1e-39 GRD, RKD4 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) AT1G18790 126 / 3e-35 AtRKD1, RKD1 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) AT1G74480 123 / 1e-33 AtRKD2, RKD2 RWP-RK domain containing 2, RWP-RK domain-containing protein (.1) AT5G66990 121 / 4e-33 RKD3 RWP-RK domain-containing 3, RWP-RK domain-containing protein (.1) AT4G35590 90 / 8e-21 RKD5 RWP-RK domain-containing 5, RWP-RK domain-containing protein (.1) AT4G24020 49 / 1e-06 NLP7 NIN like protein 7 (.1) AT2G17150 48 / 3e-06 NLP1 Plant regulator RWP-RK family protein (.1.2) AT3G59580 47 / 7e-06 NLP9 Plant regulator RWP-RK family protein (.1.2) AT1G64530 46 / 1e-05 NLP6 Plant regulator RWP-RK family protein (.1) AT4G35270 46 / 1e-05 NLP2 Plant regulator RWP-RK family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G016800 [exp] 299 / 4e-103 AT5G53040 138 / 8e-40 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) Potri.005G101000 [exp] 96 / 4e-23 AT4G35590 273 / 5e-90 RWP-RK domain-containing 5, RWP-RK domain-containing protein (.1) Potri.006G223100 [exp] 58 / 1e-09 AT5G16100 72 / 7e-14 unknown protein Potri.002G058800 [exp] 49 / 8e-07 AT1G06500 95 / 4e-24 unknown protein Potri.009G087500 [exp] 49 / 2e-06 AT4G35270 301 / 5e-92 Plant regulator RWP-RK family protein (.1) Potri.001G087900 [exp] 49 / 2e-06 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.001G293300 [exp] 48 / 3e-06 AT4G35270 301 / 7e-92 Plant regulator RWP-RK family protein (.1) Potri.003G143000 [exp] 46 / 1e-05 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.004G205500 [exp] 45 / 2e-05 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005921 [exp] 148 / 3e-43 AT5G53040 143 / 2e-41 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) Lus10034456 [exp] 119 / 1e-31 AT1G18790 157 / 9e-46 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) Lus10035008 [exp] 115 / 1e-30 AT1G18790 145 / 6e-42 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) Lus10019100 [exp] 114 / 3e-30 AT1G18790 149 / 2e-43 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) Lus10004035 [exp] 57 / 4e-09 AT5G16100 68 / 2e-12 unknown protein Lus10003199 [exp] 49 / 2e-06 AT4G24020 953 / 0.0 NIN like protein 7 (.1) Lus10023049 [exp] 47 / 5e-06 AT4G24020 783 / 0.0 NIN like protein 7 (.1) Lus10014429 [exp] 44 / 4e-05 AT1G20640 132 / 7e-34 Plant regulator RWP-RK family protein (.1.2) Lus10008143 [exp] 45 / 5e-05 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10023931 [exp] 44 / 5e-05 AT2G17150 164 / 6e-45 Plant regulator RWP-RK family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02042 [poplar] [flax] RWP-RK RWP-RK domain
Representative CDS sequence Show only first row Show all	>Potri.015G011800.1 pacid=42775231 polypeptide=Potri.015G011800.1.p locus=Potri.015G011800 ID=Potri.015G011800.1.v4.1 annot-version=v4.1 ATGGAGAATCCACCTGACTTTGATGTCTGGGATCTTGGTGTTGATGATCAAGACACCTTCCAAAAAATTTCAGAACTTCCCCCCTTCGAAAGCCTTTTTG ATCCGTCGATTTTGCTACCCTTGGTGCCCCGTGACGAGAACATCAATCAGTTCAAACACCTTGAAGATATCAGTAGTGATAATATTTTTTCTGAAATGCT AAACCCTGGCATCCATGCTTCATTTGGGCAAAATCTTGACAACAATGTCATCAAAGGTGATCATCACCTGAAAGGATTCTCCATGTTATTGGTCCAAAGC GTTTGTGCTAGTTCTTCAAGCGTGAAGGAGGAGGAAGAAGAAGAAGAAGAAAGTAGGAAGATGAGCGGGAGGAAGAGGTCGGTTGCTTTGGGGTTGGAAG AAATCCAAAAGCATTTTAACATGCCAATCACTCAAGCGGCTAGAGAAATGAAAGTGGGGCTAACTGTGCTGAAAAAAAGATGCAGAGAACTTAAGATCAT GAGGTGGCCTCATAGGAAGATCAAGAGCTTGAATTCTCTTATCAACAATGTCAAGGAAATGGGGCTGAGTGAATACGACGCAATCATGCTGGAGGAGCAC AAAAGGCTTATTGAAAAACTGCCGGACTTAGAGCTGACCGAAAGAACAAAGAAGCTGAGGCAGGCTTGTTTCAAGGCCAATTACAAGAGGAGAAGGCTCT CGGCAGCATATCATTGA
AA sequence Show only first row Show all	>Potri.015G011800.1 pacid=42775231 polypeptide=Potri.015G011800.1.p locus=Potri.015G011800 ID=Potri.015G011800.1.v4.1 annot-version=v4.1 MENPPDFDVWDLGVDDQDTFQKISELPPFESLFDPSILLPLVPRDENINQFKHLEDISSDNIFSEMLNPGIHASFGQNLDNNVIKGDHHLKGFSMLLVQS VCASSSSVKEEEEEEEESRKMSGRKRSVALGLEEIQKHFNMPITQAAREMKVGLTVLKKRCRELKIMRWPHRKIKSLNSLINNVKEMGLSEYDAIMLEEH KRLIEKLPDLELTERTKKLRQACFKANYKRRRLSAAYH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53040		GRD, RKD4	RWP-RK domain-containing 4, GR...		Potri.015G011800 [exp]	0	1
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.010G055800 [exp]	4.58	0.9300
AT1G32700			PLATZ transcription factor fam...		Potri.005G130300 [exp]	7.93	0.9147
					Potri.018G060100 [exp]	8.36	0.9146
AT5G05800			unknown protein		Potri.004G097601 [exp]	35.74	0.8172
AT1G03050			ENTH/ANTH/VHS superfamily prot...		Potri.006G118100 [exp]	40.12	0.7940
AT2G01260			Protein of unknown function (D...		Potri.019G119100 [exp]	41.46	0.8387
AT3G50940			P-loop containing nucleoside t...		Potri.005G115200 [exp]	45.59	0.7280
AT5G28780			PIF1 helicase (.1)		Potri.009G002650 [exp]	51.00	0.7376
AT2G39800		ATP5CS, P5CS1	delta1-pyrroline-5-carboxylate...		Potri.008G060200 [exp]	61.44	0.7895
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.015G147800 [exp]	71.24	0.8397

Compare expression of checked genes

Potri.015G011800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.