Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27810 97 / 5e-25 unknown protein AT5G53030 97 / 2e-24 unknown protein AT2G46535 50 / 8e-08 unknown protein AT4G00950 50 / 2e-07 MEE47 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1) AT3G61840 49 / 4e-07 Protein of unknown function (DUF688) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G016700 [exp] 201 / 3e-66 AT4G27810 87 / 1e-21 unknown protein Potri.014G100200 [exp] 100 / 1e-25 AT4G00950 87 / 7e-20 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1) Potri.002G172900 [exp] 85 / 4e-20 AT4G00950 113 / 5e-30 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010114 [exp] 69 / 7e-14 AT4G10810 63 / 5e-13 unknown protein Lus10005920 [exp] 55 / 7e-09 AT4G27810 44 / 3e-05 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05097 [poplar] [flax] DUF688 Protein of unknown function (DUF688)
Representative CDS sequence Show only first row Show all	>Potri.015G011900.2 pacid=42775612 polypeptide=Potri.015G011900.2.p locus=Potri.015G011900 ID=Potri.015G011900.2.v4.1 annot-version=v4.1 ATGATGGGGTCTGGTGATGATCAGCTAGGTTATGATCCGAGTCCTACACCAAAACTCTCCTTGTTTTCACTTTCAAGCAAGCTACATGAGTCGCCTGCAG GGATGTTAACCCCGCCAATCCATACATTAGCCTCAGTTCCATTCAAGTGGGAGGAAGCACCAGGCAAGCCTAGACCTTCTTGCGCCACTCAATCCAAGCC CAAGTTTGCTAGGTGCTTGGAACTGCCACCAAGGTTGTTAAACGAGGCCAAGGTTAGCAACATGCCTTCTCCAACAACTGTCTTCGATGGACCTTACGTG CCTCGTTCCTTATCTCTTGGAAAGGGACGTTCATTGAGCAACTTAGAGAATTTGGGCTGCGGGGAGGTGAATAGCAAAGAGAGGGTTACATTTGGGTCTG GTAGGTGGGGATTCTTCAGGAAAAATAATAAAGAAGTTGCTGCTCCTAGCCATGGAGATATTGGTGTTAATCATGGAGGACGTGAAGCAGTTAGAGTGAA GATCACAAGAATTAGAAGAAGATCAAGTTTCTTGGGGCTTTCTCACACAAGATCACATTTTTGGACAGACATCTGTGAAAGCTTCAAGCATGCGGTCCCA TGGACACGAAGGTAG
AA sequence Show only first row Show all	>Potri.015G011900.2 pacid=42775612 polypeptide=Potri.015G011900.2.p locus=Potri.015G011900 ID=Potri.015G011900.2.v4.1 annot-version=v4.1 MMGSGDDQLGYDPSPTPKLSLFSLSSKLHESPAGMLTPPIHTLASVPFKWEEAPGKPRPSCATQSKPKFARCLELPPRLLNEAKVSNMPSPTTVFDGPYV PRSLSLGKGRSLSNLENLGCGEVNSKERVTFGSGRWGFFRKNNKEVAAPSHGDIGVNHGGREAVRVKITRIRRRSSFLGLSHTRSHFWTDICESFKHAVP WTRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27810			unknown protein		Potri.015G011900 [exp]	0	1
					Potri.001G077280 [exp]	1.73	0.9142
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Potri.006G275000 [exp]	2.44	0.9007	Pt-VHA1.2
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.009G042400 [exp]	5.09	0.9047
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.014G020500 [exp]	6.00	0.8776	Pt-IFS1.50,CYP81B7
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.001G436600 [exp]	7.74	0.8937
AT5G38710			Methylenetetrahydrofolate redu...		Potri.004G106400 [exp]	10.09	0.8885
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Potri.017G084300 [exp]	16.12	0.8678
AT1G11330			S-locus lectin protein kinase ...		Potri.004G027300 [exp]	16.24	0.8488
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G072666 [exp]	16.73	0.8766
AT4G14450		ATBET12	unknown protein		Potri.010G073900 [exp]	16.97	0.8787	Pt-ATBET12.2

Compare expression of checked genes

Potri.015G011900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.