Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53020 379 / 6e-120 Ribonuclease P protein subunit P38-related (.1) AT3G45900 76 / 2e-14 Ribonuclease P protein subunit P38-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G016600 [exp] 1140 / 0 AT5G53020 464 / 8e-153 Ribonuclease P protein subunit P38-related (.1) Potri.001G130100 [exp] 67 / 3e-11 AT3G45900 281 / 8e-91 Ribonuclease P protein subunit P38-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018117 [exp] 615 / 0 AT5G53020 410 / 4e-133 Ribonuclease P protein subunit P38-related (.1) Lus10022396 [exp] 357 / 2e-111 AT5G53020 414 / 1e-134 Ribonuclease P protein subunit P38-related (.1) Lus10034732 [exp] 75 / 1e-13 AT3G45900 264 / 3e-84 Ribonuclease P protein subunit P38-related (.1) Lus10033275 [exp] 72 / 6e-13 AT3G45900 268 / 2e-85 Ribonuclease P protein subunit P38-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G012000.1 pacid=42776308 polypeptide=Potri.015G012000.1.p locus=Potri.015G012000 ID=Potri.015G012000.1.v4.1 annot-version=v4.1 ATGGATGGAAAAGAGGTCTCTGGTTCTTATTTGATAGTCTCAGAAGGGAAGAGTGACAGCTTCTATCCAATGTATTTTGGTGTTTCTTGTGCTCTCTTCG CTCTCAAAGTCTTGACAAAGCCTGTTAAGGAAGACGATAGATGGTCAGAATTGTGCGATAAAATGCTTCGAGGAAGTGCTCATCTCTTGAGATTGCTTGT TTGGAAAATCCAGAGAGAAGGAGCAGATGGTGAACACTGTGAGCTTCTTCATAAGCTTGAGACTGCTGAGAAAGAGATCATGGAGCTGAAGAAAATAAGG TGTGACGATGCAAAAGCGAATGAGAAAGTTGTTAGTATCCCTGCATCGCAAGAGCAGAGCTGGTTGATCGAAAGGAAGGAGCTTCGACAGCACATTGGAG GTCTTATGAGTGAATTGAGGGTTCTTGAGAAGAAGAATGAAGAAGCTATTTCTGAATTGAATGAAAAATTGAACGAGATGAAACTTTTGGTGCAGTCCAA GGATAAGGCAGTGGAGGAAGAGGAGCATAAAAGGAAGGAGTTAGAAGAAAAATTAGCAAAGACTGAAAAAATTGCAGAAGAATTGAGAGAAACGGCTAAG CGTAAGGCTCAAGAGCATTCTACTGATATTTTGAAGCACAAAACTGCCTTCCTTGAGCTGGTATCTAACCAACGGCAGCTTGAAGCTGAGATGGGCAGAG CACTCAGGCAACTTGAGGCTAAAAGGAAAGAGCTTGATGCAGTCTTAGAGCAAAAGGAGGAGTCAATGATGTTGACCCAAAAACTATCCATGGAGGTTGT GAAGGTGAGAAAGGATTTGGAACAGAAAGATAAGATCTTGTCAGCAATTCTGAGGAAATCCAAGCTGGATACAACTGAAAAGAAAATGCTCTTGAAGGAA GTTAAATTATCAAAGTCCAAGAAGAAGAAAGCTGAACTAGAAACAACAGAAAGTTGGAAATCTGTTTCAGAGTCTAAGCATGAGAAGCATTCATTGAGAA GTATGTTTTCTCTCCACACCAATCTGATGAGGTCAGAAGATCCTCCAATTAAAAGAGGGGCATCCCAAGTTGTAAAGGGCGGATCACAGTCAATTGATTA TGATCTTGAGTATGAGAATCCTGAGTTTCAAAAGAACTCGGAAGTTTCTTCGCCACTTTCTAACCTCTATTCACCAGAAGGATGTGATGAACTAGCAATT GCAGCTGATGGCAAGCGGTTGGAAGGATGGGTTCGCTCGGAAGCAGGAAAGTACGCAGCCACAATTGAGAAGAGGCATCATTTAGAGATAGATGCTTTTG CGGAACAAATGAGACTTAAAGATGAGAAATTAGAAGCTTTTCGCTGGCGAATGCTGAGCATGGAAATAGAATCAAAGCGTCTGCAGTCTCACATTGAAGG GCTGAACCGGGATGTTTCACGGATCAGGCATGAGAACATGAAACTGGAAGCCTTGTTATTGGAGAGGAAAAAAGAATTAACCGACTTGAAAGACCAGCTC AAGGCACAAATAAAACCTCAGTCTTGCCAACAGGCCAACTTAAGCTCATCTCTAGATGATCCAGCATTAGTCCATGATTCCATTTTGTCCAGAGCCAAGA ATGTAAAGAAAGAACCAACAGAGAATAATCAAGAGGGAAAGGTACATCTGACGGAAACATCTCAAGAGAAGAATACTGAAAAAGAAGAAGAAGAAGAAGA TGAGGAAGCCCTTCATAACCAGTCCAGAAATGTCAGTAAAATTGTCCAATCTCCAGAAAACGAGTTTGAGGAAGAGAAGGATGTCTCCAACCAAGGCTGC ACTCAAGAGGCAAGTGCGAGTCCAGTGGTGGTTGATACTGTAGAAAAGATAGCATTGACTAGCCAGTCATTGATGAAGACAAATAATTCAACATGGGGGA TGGACCTCCATGCTCTTGGAGTTTCTTATAAGATCAAGAGGCTGAAGCAGCAACTTCTAATGCTAGAGAGATTGACAGGAAAGCAAGACAGTGGTGAACA TTTAGGTAACAGTGATGAGGCAAAAAATGGGATAAAGGCCTTCCAAGCATTGGTGTCTTTGCTTAATAAACAAGTCAACAAGTACCAGTCGCTCCAAGAG AAGACCGATGAACTCTGCAAACGGATGCATGATAATGATGTAGACGTGAGTCGCAGAGATTCCAGCACTAGCACTGCTAGGAAAAAGGGAGAAACTAAAA CATTAGAGCAGTTCCTAGAGGAAACATTTCAGGTTCAGAGATACATGGTTGCAACAGGACAGAAACTGATGGAAGTTCAGTCCAGGATTGCATCTGATTT CGTCAAGGTCCCCGAAGAGCTTGAAAAATCTGCCGGCAGCTTTGACATGAAGCGTTTCGCTGACAGCATTAAAACTCTTTTCCAAGAAGTTCAAAGAGGA CTTGAAGTTCGGATTGCTCGAATTATTGGTGATCTTGGGGGCACTCTAGCTTGTGAGGGAATGATTCGTATGAGAGGGTTGTGA
AA sequence Show only first row Show all	>Potri.015G012000.1 pacid=42776308 polypeptide=Potri.015G012000.1.p locus=Potri.015G012000 ID=Potri.015G012000.1.v4.1 annot-version=v4.1 MDGKEVSGSYLIVSEGKSDSFYPMYFGVSCALFALKVLTKPVKEDDRWSELCDKMLRGSAHLLRLLVWKIQREGADGEHCELLHKLETAEKEIMELKKIR CDDAKANEKVVSIPASQEQSWLIERKELRQHIGGLMSELRVLEKKNEEAISELNEKLNEMKLLVQSKDKAVEEEEHKRKELEEKLAKTEKIAEELRETAK RKAQEHSTDILKHKTAFLELVSNQRQLEAEMGRALRQLEAKRKELDAVLEQKEESMMLTQKLSMEVVKVRKDLEQKDKILSAILRKSKLDTTEKKMLLKE VKLSKSKKKKAELETTESWKSVSESKHEKHSLRSMFSLHTNLMRSEDPPIKRGASQVVKGGSQSIDYDLEYENPEFQKNSEVSSPLSNLYSPEGCDELAI AADGKRLEGWVRSEAGKYAATIEKRHHLEIDAFAEQMRLKDEKLEAFRWRMLSMEIESKRLQSHIEGLNRDVSRIRHENMKLEALLLERKKELTDLKDQL KAQIKPQSCQQANLSSSLDDPALVHDSILSRAKNVKKEPTENNQEGKVHLTETSQEKNTEKEEEEEDEEALHNQSRNVSKIVQSPENEFEEEKDVSNQGC TQEASASPVVVDTVEKIALTSQSLMKTNNSTWGMDLHALGVSYKIKRLKQQLLMLERLTGKQDSGEHLGNSDEAKNGIKAFQALVSLLNKQVNKYQSLQE KTDELCKRMHDNDVDVSRRDSSTSTARKKGETKTLEQFLEETFQVQRYMVATGQKLMEVQSRIASDFVKVPEELEKSAGSFDMKRFADSIKTLFQEVQRG LEVRIARIIGDLGGTLACEGMIRMRGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53020			Ribonuclease P protein subunit...		Potri.015G012000 [exp]	0	1
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Potri.006G262200 [exp]	1.73	0.8675	PKL.2
AT4G27190			NB-ARC domain-containing disea...		Potri.013G015700 [exp]	3.16	0.8663
AT5G41620			unknown protein		Potri.014G093400 [exp]	5.47	0.8054
AT2G39490			F-box family protein (.1)		Potri.008G050800 [exp]	7.00	0.8297
AT5G43310			COP1-interacting protein-relat...		Potri.010G070200 [exp]	8.06	0.7548
AT2G38800			Plant calmodulin-binding prote...		Potri.003G201400 [exp]	9.16	0.8425
AT4G27190			NB-ARC domain-containing disea...		Potri.001G433466 [exp]	11.66	0.7966
AT3G22550			Protein of unknown function (D...		Potri.010G085700 [exp]	12.24	0.7801
AT4G27190			NB-ARC domain-containing disea...		Potri.013G015900 [exp]	12.72	0.8253
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Potri.008G146600 [exp]	14.49	0.8065	CYCD1.2

Compare expression of checked genes

Potri.015G012000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.