Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53000 501 / 8e-178 TAP46 2A phosphatase associated protein of 46 kD (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G016500 [exp] 633 / 0 AT5G53000 525 / 0.0 2A phosphatase associated protein of 46 kD (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036520 [exp] 548 / 0 AT5G53000 583 / 0.0 2A phosphatase associated protein of 46 kD (.1) Lus10041409 [exp] 540 / 0 AT5G53000 573 / 0.0 2A phosphatase associated protein of 46 kD (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04177 [poplar] [flax] TAP42 TAP42-like family
Representative CDS sequence Show only first row Show all	>Potri.015G012200.2 pacid=42774822 polypeptide=Potri.015G012200.2.p locus=Potri.015G012200 ID=Potri.015G012200.2.v4.1 annot-version=v4.1 ATGGAAGACTTGCCCCTTCCTTCTCTCTTCGATCAAGCTTCAAAAATCCATCTAAAAGCAACAGAATCTGGTTCTAATGATAAGGAATTGGTGAAGAAGG GAATTGAAGCACTGGAGAATTGTGAGGAAATGATTAGTAAATTGGGTTTATTTTCTTCTAATGAGACTAAAGAGGATATTAGCACTACCAATCTCAAGTA TATTCTGGTTCCATTTTATCTGGCAGAGCTGACTGAAAACATTGCTCAGGATGATAGGATACAAATTTTAAAGGCTTCCCAGGCAAAGTTAAAGGAATTC CTCTCATTTTGTGAGGCAATGGAACTTGTACCAGAGGAGGAGTTGCAAACATTTTCTCAAGGGACTCCAAATACTTTTGCAGATCGAAGGGCTCTAAAGA TTGCCAGATACAGACGCCAAATAGCTGCAGAAGCAAAGCTGGAGAAAATGAAGGAGCAGAAAGAGCGGCGTTTTCATTCAACTAAAGCTGCAGCAGTATC AACTCTGGTTGAGGCCGGGGAGGAAGACCTGCTGGATGATGATGGAGAAGAAGAGCGGGAGGCTTGGATTATTACCATCTCTTTGGCTATCTGTAAGGCA ATCGATCTGCTGGAAATGTTAAAGAAAGAGGAAGAAATGCTTTCAGCTGTAAAGGAAAGACAGCTAAAGGGAGGGGACAAAGCTTTTTCCCAGATGATTC TTGATGAACGTGCCAAGAAAGCTGAAGATTGGCATCGTGATGCTGCAGTAAAAGCAAGGTATACTCAACCGGCGCCGCCTATCACATGTGCTACTTTTGC TCAAGATGTTTTAGAAGGGAGAGCAAAGGTTTCAGAAGCACATGATCACAAGCACCTGCCAGTGACATTCGGACCAGCAAGTATTGTGGGTGGAAGCCTA TCAAACGAAAGGGAAAGGATGACAGCACAGGTCTTCCAACCTGGCCATAGGTTGCCAACCATGAGTATAGAAGAAGCTGGGTTGAAGGAGATGGAGATTA TGAATAAATGGCAAGAGAGAAACGTTAAATTCATGGAAGAAGCAAACTCTGCATGGTACAAGGACAATCAGAAATTAAAACCAAGCGAAGAAGAAGAGGA TGAAGATGATGACGATGCTGCTGTAGAGAAGGCAAGAGCATTTGATGACTGGAAAGATGATCATCCTCGCGGTGCTGGCAATAAGAAGCTCACCCCTTGT GGTTAA
AA sequence Show only first row Show all	>Potri.015G012200.2 pacid=42774822 polypeptide=Potri.015G012200.2.p locus=Potri.015G012200 ID=Potri.015G012200.2.v4.1 annot-version=v4.1 MEDLPLPSLFDQASKIHLKATESGSNDKELVKKGIEALENCEEMISKLGLFSSNETKEDISTTNLKYILVPFYLAELTENIAQDDRIQILKASQAKLKEF LSFCEAMELVPEEELQTFSQGTPNTFADRRALKIARYRRQIAAEAKLEKMKEQKERRFHSTKAAAVSTLVEAGEEDLLDDDGEEEREAWIITISLAICKA IDLLEMLKKEEEMLSAVKERQLKGGDKAFSQMILDERAKKAEDWHRDAAVKARYTQPAPPITCATFAQDVLEGRAKVSEAHDHKHLPVTFGPASIVGGSL SNERERMTAQVFQPGHRLPTMSIEEAGLKEMEIMNKWQERNVKFMEEANSAWYKDNQKLKPSEEEEDEDDDDAAVEKARAFDDWKDDHPRGAGNKKLTPC G

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53000		TAP46	2A phosphatase associated prot...		Potri.015G012200 [exp]	0	1
AT3G10330			Cyclin-like family protein (.1...		Potri.016G057100 [exp]	1.00	0.7553	TFIIB1.3
AT1G30890			Integral membrane HRF1 family ...		Potri.007G129900 [exp]	6.63	0.7243
AT5G17070			unknown protein		Potri.019G052400 [exp]	18.65	0.6845
					Potri.010G058400 [exp]	21.90	0.6782
AT5G17840			DnaJ/Hsp40 cysteine-rich domai...		Potri.013G066000 [exp]	22.04	0.6564
AT5G46230			Protein of unknown function, D...		Potri.004G064700 [exp]	22.62	0.6532
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Potri.010G110000 [exp]	23.91	0.6607
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Potri.009G159900 [exp]	24.95	0.6986
AT3G60540			Preprotein translocase Sec, Se...		Potri.002G143100 [exp]	25.15	0.7229
AT1G75560			zinc knuckle (CCHC-type) famil...		Potri.005G234700 [exp]	25.45	0.6999

Compare expression of checked genes

Potri.015G012200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.