Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52990 192 / 2e-60 SNARE-like superfamily protein (.1) AT4G27840 175 / 7e-54 SNARE-like superfamily protein (.1) AT1G33475 83 / 1e-18 SNARE-like superfamily protein (.1) AT4G10170 82 / 2e-18 SNARE-like superfamily protein (.1.2) AT3G54300 56 / 5e-09 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT4G15780 50 / 3e-07 ATVAMP724 vesicle-associated membrane protein 724 (.1) AT1G04760 47 / 2e-06 ATVAMP726 vesicle-associated membrane protein 726 (.1) AT1G04750 46 / 7e-06 ATVAMP7B, ATVAMP721, VAMP7B VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) AT2G32670 46 / 1e-05 ATVAMP725 vesicle-associated membrane protein 725 (.1) AT2G33120 44 / 3e-05 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G016400 [exp] 419 / 7e-150 AT5G52990 200 / 2e-63 SNARE-like superfamily protein (.1) Potri.013G094900 [exp] 86 / 1e-19 AT4G10170 270 / 3e-91 SNARE-like superfamily protein (.1.2) Potri.003G048600 [exp] 81 / 1e-17 AT4G10170 254 / 1e-84 SNARE-like superfamily protein (.1.2) Potri.010G239900 [exp] 64 / 8e-12 AT3G54300 387 / 6e-138 vesicle-associated membrane protein 727 (.1.2) Potri.008G019400 [exp] 59 / 4e-10 AT3G54300 407 / 3e-146 vesicle-associated membrane protein 727 (.1.2) Potri.012G119600 [exp] 53 / 3e-08 AT2G33120 363 / 2e-129 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.008G209100 [exp] 52 / 1e-07 AT4G15780 367 / 9e-131 vesicle-associated membrane protein 724 (.1) Potri.003G177700 [exp] 49 / 1e-06 AT1G04750 389 / 1e-139 VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) Potri.015G118300 [exp] 47 / 2e-06 AT2G33120 359 / 8e-128 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022397 [exp] 237 / 3e-78 AT5G52990 189 / 3e-59 SNARE-like superfamily protein (.1) Lus10002944 [exp] 88 / 2e-20 AT4G10170 247 / 2e-82 SNARE-like superfamily protein (.1.2) Lus10043431 [exp] 60 / 5e-10 AT3G54300 325 / 9e-111 vesicle-associated membrane protein 727 (.1.2) Lus10034145 [exp] 58 / 3e-09 AT3G54300 322 / 4e-109 vesicle-associated membrane protein 727 (.1.2) Lus10022804 [exp] 51 / 2e-07 AT1G04760 377 / 1e-134 vesicle-associated membrane protein 726 (.1) Lus10018296 [exp] 51 / 2e-07 AT1G04760 366 / 2e-130 vesicle-associated membrane protein 726 (.1) Lus10025933 [exp] 50 / 3e-07 AT1G04760 381 / 2e-136 vesicle-associated membrane protein 726 (.1) Lus10040611 [exp] 50 / 4e-07 AT1G04760 369 / 1e-131 vesicle-associated membrane protein 726 (.1) Lus10038166 [exp] 49 / 9e-07 AT1G04760 383 / 3e-137 vesicle-associated membrane protein 726 (.1) Lus10011870 [exp] 48 / 1e-06 AT1G04760 376 / 3e-134 vesicle-associated membrane protein 726 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G012300.1 pacid=42776348 polypeptide=Potri.015G012300.1.p locus=Potri.015G012300 ID=Potri.015G012300.1.v4.1 annot-version=v4.1 ATGATTTCCAATCCAAATCATGTTTTCTATGCTTGCATTGCTAAAGGACCTACAGTTCTTGCTGAGTTCTCATCATCAAAAGAATCAGGAATTGAAATCA TTGGTCAAAGATGCATAGAGGAAACCCCACCTAACCATTCCATGTTTTCCCATACAACCCGCAACAAGACTTACACTTTCTTAATTGATGACCCTTTTGC CTATTTTGCTATTTTTGATGAGAATCTCCAAAAGTCTGAGTCTTTATGGTTTTTGAACCGTGTAAAGGATGCTTTTGAGGAGTTTTTGGGGGCTAAGATG ATGAAAGATGGTGAAAAGATGGGTTCCTTTTGTTTCCAAGGTGAATTGCGGTTTGTGTTTAGACAGATATTGGCGTTGGATGCTGACTTGGTGAATGCTT TAATGGAGGAATCAACAAAGGATAGTAGGAATCCAAGCTTGGATTCGACGAAAGCGAAGGGAGCTGTGATTAGACCTTTGCTTCCGAAGCCAAGTAAAGT CTTGATGAAGAAAAAGAAGAGATCACCAGGAGAGGCTAATGGAGATCATCATGGTGGTGATTTGGATAATAACAAGGCGAGTGGTGTTGGTGAGAATGGA AGTAGGGACTTTTCGGTTACGATGATGCAAAAGAGTGGTGGGTTTTATATGGGGGATGGCAAGCAAAAGGCTAAACAGATTTGGAAGAAGCATGTTTGGG TGGTTTTGATATTGGATCTGATTGTTTGTGCAGTTTTGTTTGGGGTTTGGTTGTGGGTTTGCAGAGGACTTAAGTGCATTGATGGTTGA
AA sequence Show only first row Show all	>Potri.015G012300.1 pacid=42776348 polypeptide=Potri.015G012300.1.p locus=Potri.015G012300 ID=Potri.015G012300.1.v4.1 annot-version=v4.1 MISNPNHVFYACIAKGPTVLAEFSSSKESGIEIIGQRCIEETPPNHSMFSHTTRNKTYTFLIDDPFAYFAIFDENLQKSESLWFLNRVKDAFEEFLGAKM MKDGEKMGSFCFQGELRFVFRQILALDADLVNALMEESTKDSRNPSLDSTKAKGAVIRPLLPKPSKVLMKKKKRSPGEANGDHHGGDLDNNKASGVGENG SRDFSVTMMQKSGGFYMGDGKQKAKQIWKKHVWVVLILDLIVCAVLFGVWLWVCRGLKCIDG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52990			SNARE-like superfamily protein...		Potri.015G012300 [exp]	0	1
AT1G73390			Endosomal targeting BRO1-like ...		Potri.017G154200 [exp]	9.79	0.5967
AT1G76920			F-box family protein (.1)		Potri.005G190400 [exp]	22.89	0.6191
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Potri.001G073800 [exp]	36.66	0.5585
AT2G06520		PSBX	photosystem II subunit X (.1)		Potri.018G065200 [exp]	37.94	0.5527
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Potri.007G032500 [exp]	41.26	0.5457
AT3G25590			unknown protein		Potri.010G133600 [exp]	43.26	0.5341
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Potri.019G124000 [exp]	62.84	0.4978
AT3G03440			ARM repeat superfamily protein...		Potri.004G088800 [exp]	76.49	0.5082
AT5G16450			Ribonuclease E inhibitor RraA/...		Potri.013G085700 [exp]	178.46	0.4567
AT1G60640			unknown protein		Potri.004G094500 [exp]	272.85	0.4316

Compare expression of checked genes

Potri.015G012300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.