Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24300 904 / 0 SSI1, SSI, ATSS1 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) AT3G01180 501 / 1e-168 ATSS2 starch synthase 2 (.1) AT1G32900 326 / 4e-103 GBSS1 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) AT4G18240 229 / 3e-64 ATSS4, SSIV ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) AT1G11720 194 / 4e-52 ATSS3 starch synthase 3 (.1.2) AT5G01220 47 / 3e-05 SQD2 sulfoquinovosyldiacylglycerol 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G084100 [exp] 483 / 4e-162 AT3G01180 985 / 0.0 starch synthase 2 (.1) Potri.011G152200 [exp] 335 / 3e-106 AT1G32900 880 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.001G449500 [exp] 333 / 1e-105 AT1G32900 922 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.001G351800 [exp] 233 / 2e-65 AT4G18240 1293 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.018G149500 [exp] 190 / 2e-52 AT4G18240 449 / 4e-146 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.004G014100 [exp] 186 / 2e-49 AT1G11720 1460 / 0.0 starch synthase 3 (.1.2) Potri.007G009600 [exp] 92 / 5e-19 AT5G65685 507 / 2e-174 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.006G097600 [exp] 46 / 6e-05 AT5G01220 750 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022398 [exp] 958 / 0 AT5G24300 874 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10018116 [exp] 937 / 0 AT5G24300 855 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10033014 [exp] 481 / 6e-161 AT3G01180 973 / 0.0 starch synthase 2 (.1) Lus10015371 [exp] 461 / 2e-153 AT3G01180 928 / 0.0 starch synthase 2 (.1) Lus10008279 [exp] 332 / 3e-105 AT1G32900 883 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10033245 [exp] 328 / 1e-103 AT1G32900 885 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10023319 [exp] 232 / 3e-65 AT4G18240 1303 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10038491 [exp] 231 / 1e-64 AT4G18240 1278 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10028133 [exp] 221 / 2e-61 AT4G18240 1285 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10042837 [exp] 216 / 3e-59 AT4G18240 1281 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00534 [poplar] [flax] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [poplar] [flax] GT-B PF08323 [poplar] [flax] Glyco_transf_5 Starch synthase catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.015G012400.8 pacid=42775270 polypeptide=Potri.015G012400.8.p locus=Potri.015G012400 ID=Potri.015G012400.8.v4.1 annot-version=v4.1 ATGGAGTCTCTTTGCATTGTTGGCAATGGAGGAGTATCGACATGCCAAGCATTTACTAGATTAGATACTACTAGGGTTGGTTTTAGGCCAAGGGCTCAAC TGGGTTTTGGTTGTTTTGTAAGGGAGAGGTATAAATATGGAAACTTGGTGATTGCAAGATCAGGGAGAAGTGAGGTGGGTAATTCAAAAGATGGAAACTT TGCTGTTGAAAATGAGAAAGAAGAGAAGCGTGGTGGTCTTATTTTAGGTCCTGAAAGGGATTCTTCTGGTTCCATTATTGGTTTTAACTTGATTCCTCCT TCTGGTGATGGTGAGGTTTTAGAGTCTCATGAAGATGCAACTACTGGTGGAACAGAAGAAGCTGAGGACATTGAAGGAGTAGAGAAAGTCCAAACCGGAG TAACTTACAATATTGTTTTTGTTACCTCTGAAGCGGCACCATATTCAAAGACTGGAGGATTAGGAGATGTGTGTGGTTCTTTGCCTATAGTGCTAGCTGC TCGTGGACATCGAGTGATGGTTGTCTCTCCTAGATACCTGCATGGTAGTCCGGCAGATAAGAATTTTGCTGGTGCTTCAGAGTTGGATTGTCATATAAAG GTATATTGCTTTGGAGGGGAACAAGAGGTTGCTTTCTTCCATGAGTACAGGGAAGGTGTTGATTGGGTGTTTGTGGACCATCCTTCATACCACAGACCTG GAAACCCATATGGTGATAGCCGTGGTGCTTTTGGTGATAATCAGTTTCGGTTCGCTTTACTTTGCCATGCAGCATGTGAAGCTCCATTGGTGCTTCCACT TGGAGGGTACACCTATGGAGAGAAATGTCTGTTCCTTGTTAATGATTGGCACGCTGGTTTGGTTCCAGTGCTTTTGGCTTCGAAATATCGTCCCTATGGA GTTTATAAGGATGCACGAACTATCCTTGTGATACATAACCTTGCACATCAGGGAGTGGAACCTGCAGCAACTTACACAAATTTGGGATTGCCTTCAGAGT GGTATGGGGCCTTGGGATGGGTGTTCCCTACTTGGGCAAGGACTCATGCTCTTGACACTGGTGAAGCTGTTAATCTTCTAAAGGGTGCAATTGTCACAGT TGATCGGATACTCACTGTTAGCAAGGGTTATGCCTGGGAAATAACAACTGTTGAAGGTGGATATGGTCTGCATGAGCTGTTAAGCAGCCGAAGGAGTGTT TTGAATGGGATCACGAATGGCATCGATATTTATGAATGGAACCCATCATCAGACAAGCACATTGCTTCCAATTACTCTGTGGATGATCTTTCTGGGAAGG TTCAGTGTAAGATTGCTTTGCAGAAGGAATTAGGTCTTCCTATTAAGCCTGATTGTCCATTGATTGGATTCATTGGGAGGCTAGACTATCAAAAAGGAAT CGACCTGATCCGCTGGGCAACTCCAGAGCTTTTGGAAGATGATGTTCAATTCGTGATGCTTGGGTCTGGGGACCCTTTGTATGAGGACTGGATGAGAGCA ACAGAGTCAACCTACAAAGATAAGTTTAGAGGTTGGGTTGGATTTAATATTCCAATTTCTCACAAGATAACAGCCGGTGCTGACATATTATTGATGCCCT CGAGATTTGAACCCTGTGGGCTAAATCAATTGTATGCAATGAGATATGGGACTGTACCAGTTGTTCATGGCACTGGAGGGCTCAGAGATACAGTACAGGC TTTCGATCCTTATTCTAAAGGAGGTCTAGGTGAAGGCACCGGGTGGATTTTTTCTCCGCTATCAAAAGAAAGCATGTTGGCGGCATTAAGAGTTGCTATC ATGACATACCGAGATCATAAATCGTCTTGGGAAGGAATAATGAAGAGAGGCATGGTGAAGGACTCCACATGGGAGAATGCTGCTGTTCACTATGAACAGG TTTTCGAGTGGGCCTTCATCGATCCACCGTATATTAATTGA
AA sequence Show only first row Show all	>Potri.015G012400.8 pacid=42775270 polypeptide=Potri.015G012400.8.p locus=Potri.015G012400 ID=Potri.015G012400.8.v4.1 annot-version=v4.1 MESLCIVGNGGVSTCQAFTRLDTTRVGFRPRAQLGFGCFVRERYKYGNLVIARSGRSEVGNSKDGNFAVENEKEEKRGGLILGPERDSSGSIIGFNLIPP SGDGEVLESHEDATTGGTEEAEDIEGVEKVQTGVTYNIVFVTSEAAPYSKTGGLGDVCGSLPIVLAARGHRVMVVSPRYLHGSPADKNFAGASELDCHIK VYCFGGEQEVAFFHEYREGVDWVFVDHPSYHRPGNPYGDSRGAFGDNQFRFALLCHAACEAPLVLPLGGYTYGEKCLFLVNDWHAGLVPVLLASKYRPYG VYKDARTILVIHNLAHQGVEPAATYTNLGLPSEWYGALGWVFPTWARTHALDTGEAVNLLKGAIVTVDRILTVSKGYAWEITTVEGGYGLHELLSSRRSV LNGITNGIDIYEWNPSSDKHIASNYSVDDLSGKVQCKIALQKELGLPIKPDCPLIGFIGRLDYQKGIDLIRWATPELLEDDVQFVMLGSGDPLYEDWMRA TESTYKDKFRGWVGFNIPISHKITAGADILLMPSRFEPCGLNQLYAMRYGTVPVVHGTGGLRDTVQAFDPYSKGGLGEGTGWIFSPLSKESMLAALRVAI MTYRDHKSSWEGIMKRGMVKDSTWENAAVHYEQVFEWAFIDPPYIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Potri.015G012400 [exp]	0	1
AT1G70820			phosphoglucomutase, putative /...		Potri.008G131400 [exp]	8.83	0.9167
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Potri.001G249800 [exp]	9.84	0.9195
AT1G76520			Auxin efflux carrier family pr...		Potri.001G456300 [exp]	10.67	0.9114
AT1G49350			pfkB-like carbohydrate kinase ...		Potri.004G151600 [exp]	13.30	0.8651
AT4G27290			S-locus lectin protein kinase ...		Potri.011G128600 [exp]	13.78	0.9093
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Potri.002G113600 [exp]	15.09	0.9110
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Potri.004G138400 [exp]	17.14	0.7906
AT4G09660			unknown protein		Potri.014G176225 [exp]	20.24	0.8990
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Potri.017G026100 [exp]	24.08	0.7917
AT1G45110			Tetrapyrrole (Corrin/Porphyrin...		Potri.002G030701 [exp]	26.38	0.8979

Compare expression of checked genes

Potri.015G012400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.