Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49260 213 / 1e-63 IQD21 IQ-domain 21 (.1.2.3) AT3G22190 57 / 1e-08 IQD5 IQ-domain 5 (.1.2) AT4G00820 53 / 3e-07 IQD17 IQ-domain 17 (.1) AT1G01110 52 / 5e-07 IQD18 IQ-domain 18 (.1.2) AT3G09710 48 / 1e-05 IQD1 IQ-domain 1 (.1.2) AT1G72670 44 / 0.0002 IQD8 IQ-domain 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G016200 [exp] 522 / 0 AT3G49260 215 / 2e-64 IQ-domain 21 (.1.2.3) Potri.016G086300 [exp] 60 / 2e-09 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.014G104600 [exp] 55 / 7e-08 AT4G00820 432 / 2e-146 IQ-domain 17 (.1) Potri.001G215200 [exp] 54 / 9e-08 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.002G178500 [exp] 54 / 2e-07 AT4G00820 458 / 1e-156 IQ-domain 17 (.1) Potri.003G042700 [exp] 51 / 1e-06 AT1G72670 223 / 3e-68 IQ-domain 8 (.1) Potri.012G022500 [exp] 45 / 0.0001 AT1G01110 242 / 2e-73 IQ-domain 18 (.1.2) Potri.001G448100 [exp] 44 / 0.0002 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.011G153400 [exp] 43 / 0.0003 AT4G00820 331 / 3e-107 IQ-domain 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018115 [exp] 302 / 6e-98 AT3G49260 358 / 8e-120 IQ-domain 21 (.1.2.3) Lus10022399 [exp] 299 / 1e-96 AT3G49260 340 / 2e-112 IQ-domain 21 (.1.2.3) Lus10013362 [exp] 53 / 2e-07 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10010104 [exp] 47 / 2e-05 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2) Lus10012608 [exp] 47 / 2e-05 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10008269 [exp] 45 / 0.0001 AT1G01110 317 / 8e-102 IQ-domain 18 (.1.2) Lus10021904 [exp] 45 / 0.0001 AT4G14750 314 / 2e-103 IQ-domain 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13178 [poplar] [flax] DUF4005 Protein of unknown function (DUF4005)
Representative CDS sequence Show only first row Show all	>Potri.015G012500.1 pacid=42776464 polypeptide=Potri.015G012500.1.p locus=Potri.015G012500 ID=Potri.015G012500.1.v4.1 annot-version=v4.1 ATGGGGAAGAAAGGAAGTGGATGGTTTACATCTGTGAAGAAAGTGTTCAAATCATCTCCCAAGGAATTACCAATAGAGAAAAAGAAAGACAATGTAGAGA AATGGCAACATGAGGCCCCAGAAGTTGTTTCATTTGAGCATTTTCCTGCTGAAAGTTCTCCTGATGTTACACATGATGAGAGCAATGCATCAAGTCCAGT AACTGAAGATAGAAACCATGTCATTGCTGTGGCAGTAGCAACTGCTGCTGCAGCTGCTCAAGCGGCAGCTAACGTTGTTCGCTTAGCCGGTTATGGTCGA TACTCTAAGGAAGAAAGAGCTGCCATCCTCATTCAATCATACTATAGGGGCTACCTTGCTCGGCGTGCCTTACGTGCCTTGAAGGGATTGGTGAGGCTTC AAGCACTAGTTAGGGGCCATAATGTACGAAAGCAAGCACAAATGACAATGAGATGTATGCAAGCACTTGTTCGAGTGCAAGCAAGAGTAAGAGCAAGAAG GCTTCAGTTAACTCATGAGAAGCTTCAAATGAAGGCCGAGGAAGAAGATGAACGAAGACTATCGGTGGTTGAAGAAATTATGAATCCTAAGAGTCCATTG AAGAGTTATAAATGGGATAGTAGGAATCGAAGTCCAGGTAAAATATTCAAGGAAAATGCTTCAAAGAAACATGATGCTGTCATGAAGAGGGAAAGAGCCC TTGCTTATGCTTACGCCTACGAGCAGCAGCAGCAGCCATTACTCTCCCAAAATAGTCCAAACGGTAAAGAAATAGGACATTTTGTGGATGGAAGTGAGAA GGCTCAATGGGGCTGGAATTGGCTTGAGGGATGGATGTCAGCACAACCATATAATGTGCGTCAATTGGGTCCAAATGAAGGCTCCTATGTGACATTAAAC ACAACCACAGCCACAGCCACGACCGATGACATGTCCGAGAAGACAGTGGAGATGGACATGGTCACCCCAACAGGCACGAGCAACTCTAACATGGGCATAC TTGATGCCAATCTGTCTTCGAATCGACACCAACGACAACTGAGTTCGAGCAATGTACCTAGCTACATGGCTCCGACCCAATCCGCGAAGGCAAAAGTGCG TAGTCAGGGCTCGACCAAGCAACAATATGCCCCAGGTACACCTCTGCGGAATCCATTCACTAAGAAAGGATCAAGCATTAATGGTGGTTCAGGTTGTGAT TCTTCTAGTTCAGGTGGCGGCACAACTTACCAGGCTCTAAGGAGCCCGAGCCCAAAACAAAACGGGATGCGTCTCCATTCTAAAAGACATGCTGGCGGGT ATAGCCCTGATTTCAATGGTGGTGGTGATGATTGGAGGGTGCCTCCTCTTGATGGTCATGGATGGAGGAATGATTTCGGTTGA
AA sequence Show only first row Show all	>Potri.015G012500.1 pacid=42776464 polypeptide=Potri.015G012500.1.p locus=Potri.015G012500 ID=Potri.015G012500.1.v4.1 annot-version=v4.1 MGKKGSGWFTSVKKVFKSSPKELPIEKKKDNVEKWQHEAPEVVSFEHFPAESSPDVTHDESNASSPVTEDRNHVIAVAVATAAAAAQAAANVVRLAGYGR YSKEERAAILIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLTHEKLQMKAEEEDERRLSVVEEIMNPKSPL KSYKWDSRNRSPGKIFKENASKKHDAVMKRERALAYAYAYEQQQQPLLSQNSPNGKEIGHFVDGSEKAQWGWNWLEGWMSAQPYNVRQLGPNEGSYVTLN TTTATATTDDMSEKTVEMDMVTPTGTSNSNMGILDANLSSNRHQRQLSSSNVPSYMAPTQSAKAKVRSQGSTKQQYAPGTPLRNPFTKKGSSINGGSGCD SSSSGGGTTYQALRSPSPKQNGMRLHSKRHAGGYSPDFNGGGDDWRVPPLDGHGWRNDFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Potri.015G012500 [exp]	0	1
AT1G22060			unknown protein		Potri.006G120400 [exp]	1.73	0.9439
AT1G72220			RING/U-box superfamily protein...		Potri.002G101800 [exp]	3.00	0.9241
AT4G10955			alpha/beta-Hydrolases superfam...		Potri.003G141100 [exp]	5.09	0.9297
AT5G12480		CPK7	calmodulin-domain protein kina...		Potri.001G257100 [exp]	6.70	0.9072	Pt-CPK7.2,CPK14
AT2G28310			Protein of unknown function (D...		Potri.009G011000 [exp]	8.83	0.9146
AT1G47200		WPP2	WPP domain protein 2 (.1)		Potri.014G021900 [exp]	9.79	0.8877	MAF1.2
AT2G28315			Nucleotide/sugar transporter f...		Potri.009G011100 [exp]	10.00	0.9188
AT1G61240			Protein of unknown function (D...		Potri.011G045300 [exp]	10.39	0.9033
AT5G39785			Protein of unknown function (D...		Potri.004G126800 [exp]	11.22	0.8997
AT4G00750			S-adenosyl-L-methionine-depend...		Potri.014G075700 [exp]	11.53	0.9103

Compare expression of checked genes

Potri.015G012500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.