Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49250 434 / 5e-151 IDN1, DMS3 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) AT5G24280 164 / 6e-44 GMI1 gamma-irradiation and mitomycin c induced 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G016000 [exp] 759 / 0 AT3G49250 426 / 8e-148 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Potri.002G172000 [exp] 380 / 2e-130 AT3G49250 311 / 1e-103 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Potri.012G016100 [exp] 201 / 1e-56 AT5G24280 1107 / 0.0 gamma-irradiation and mitomycin c induced 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023253 [exp] 499 / 9e-177 AT3G49250 359 / 7e-122 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10008855 [exp] 473 / 2e-166 AT3G49250 345 / 2e-116 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10008854 [exp] 385 / 2e-133 AT3G49250 289 / 1e-95 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10030244 [exp] 271 / 1e-87 AT3G49250 241 / 2e-76 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10003997 [exp] 263 / 7e-85 AT3G49250 226 / 7e-71 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10022400 [exp] 191 / 3e-53 AT5G24280 1270 / 0.0 gamma-irradiation and mitomycin c induced 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G012600.2 pacid=42775953 polypeptide=Potri.015G012600.2.p locus=Potri.015G012600 ID=Potri.015G012600.2.v4.1 annot-version=v4.1 ATGTTTCAACCCAGCAACCATTCTCAGGATGCATCATCGTCTGCATTAATGCAAGTGGATCCAAAAGAAACTACTATTGTTGTGAGGGATGAGATGCAAA ATGGAAGATTCCCACAAGCCCAAACCATCCTCTACAATTCTAAGAAACTTCAAGAAGATTTGCATGTGCTAGGGATGAAAATCAAACATCATGAGGACAA CATTAAGTTTCTGAAGAGTCACAAAAACAAATTAGATGATTCCATTCTTGATCTGCAAGTTACCCTTGGCAAATATCATTCTTCAACAATGCCAAATAAT GAAAATGATGCCCATTACTCCAATCAGAGTGAGGATGAAACAATGGAACAAATTCTACAGCATGAAAAATCTGCTGCGGGCATTTTGTGCCGGCTGAAAA TGAGCCATGGCACTCAAATTTCACATCCGTCATTTACCAACGATGTGCTTGGCGTTGTTGCTACACTTGGCAAGGTAGATGATGATAACCTTGGCAGGCT TTTTTCCGAGTACTTGGGTGTGGAGACTATGCTGGCAATTGTCTGTAAGACATATGAAGGTGTAAAAGCTCTAGAAACATATGACAAGGAAGGCCAGATA AATAAAGACTCCGGCCTTCATGGCCTTGGTGCTTCTATTGGGAAGGAATTGGATGGTCGATTTCTTGTCTTTTGTCTTGAAAATCTAAGACCCTATTGCG GTGAATTTGTGGTGGATGACCCACAAAGGAGGCTTGATCTCCTTAAGCCAAAATTACCTAACGGGGAGTGCCCACCTGGGTTTATTGGCTTTGCTGTAAA TATGATCAACGTGGAATTCACAAACTTATTTTATCTCACAGGCAGCGGATATGGTCTTAGAGAGACTCTATTTTATAATCTGTTCTCCCGTCTACAAGTT TATAGAACAAGGGAAGACATGGTACTCGCTCTTCCTTGTATAAGTGATGGAGCCATTTCACTGGATGGAGGAATGATGAAGGGTACTGGTATCTTTTCTC TAGGTAATCGGAATAATGTGGATGTAAGATTCCCAAAATTGTCTGTGACATCAACCCTGCCTGACAACTACATTGACACCGAGAAGCAGCTCAAGGAGAC CAAATGGAAAAGGGAAAAAATGCTGGAGGATATAAAGAGAGAACAAGCACTATTAGATGCTGCAAAGCAAAGTTTTGAGAGAAAGAAGGAAGAGTTTGTT AAATTTCTGGCTCAAAGCTCAGCATATGCAAGTCAGATGCAGACAGGACTTACACCAAGATAA
AA sequence Show only first row Show all	>Potri.015G012600.2 pacid=42775953 polypeptide=Potri.015G012600.2.p locus=Potri.015G012600 ID=Potri.015G012600.2.v4.1 annot-version=v4.1 MFQPSNHSQDASSSALMQVDPKETTIVVRDEMQNGRFPQAQTILYNSKKLQEDLHVLGMKIKHHEDNIKFLKSHKNKLDDSILDLQVTLGKYHSSTMPNN ENDAHYSNQSEDETMEQILQHEKSAAGILCRLKMSHGTQISHPSFTNDVLGVVATLGKVDDDNLGRLFSEYLGVETMLAIVCKTYEGVKALETYDKEGQI NKDSGLHGLGASIGKELDGRFLVFCLENLRPYCGEFVVDDPQRRLDLLKPKLPNGECPPGFIGFAVNMINVEFTNLFYLTGSGYGLRETLFYNLFSRLQV YRTREDMVLALPCISDGAISLDGGMMKGTGIFSLGNRNNVDVRFPKLSVTSTLPDNYIDTEKQLKETKWKREKMLEDIKREQALLDAAKQSFERKKEEFV KFLAQSSAYASQMQTGLTPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Potri.015G012600 [exp]	0	1
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Potri.012G035900 [exp]	6.32	0.7129
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Potri.018G066300 [exp]	6.55	0.7130	SMH903
AT1G80710		DRS1	DROUGHT SENSITIVE 1 (.1)		Potri.018G112500 [exp]	20.88	0.6783
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.009G050700 [exp]	26.26	0.6848
AT5G04310			Pectin lyase-like superfamily ...		Potri.010G229000 [exp]	34.78	0.6736
AT5G57100			Nucleotide/sugar transporter f...		Potri.018G139500 [exp]	46.64	0.6221
AT3G13690			Protein kinase protein with ad...		Potri.001G200000 [exp]	55.09	0.5942
AT1G05070			Protein of unknown function (D...		Potri.005G038000 [exp]	59.66	0.6316
AT5G08260		SCPL35	serine carboxypeptidase-like 3...		Potri.007G072300 [exp]	61.16	0.6241
AT4G37760		SQE3	squalene epoxidase 3 (.1)		Potri.007G007600 [exp]	61.62	0.6329

Compare expression of checked genes

Potri.015G012600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.